Analysis of early changes in DNA methylation in synovial fibroblasts of RA patients before diagnosis

Abstract DNA methylation is an important epigenetic modification that is known to be altered in rheumatoid arthritis synovial fibroblasts (RASF). Here, we compared the status of promoter DNA methylation of SF from patients with very early RA with SF from patients with resolving arthritis, fully esta...

Descripción completa

Guardado en:
Detalles Bibliográficos
Autores principales: Emmanuel Karouzakis, Karim Raza, Christoph Kolling, Christopher D. Buckley, Steffen Gay, Andrew Filer, Caroline Ospelt
Formato: article
Lenguaje:EN
Publicado: Nature Portfolio 2018
Materias:
R
Q
Acceso en línea:https://doaj.org/article/66ae989f317c47c48a1eb0beaea82838
Etiquetas: Agregar Etiqueta
Sin Etiquetas, Sea el primero en etiquetar este registro!
id oai:doaj.org-article:66ae989f317c47c48a1eb0beaea82838
record_format dspace
spelling oai:doaj.org-article:66ae989f317c47c48a1eb0beaea828382021-12-02T12:32:09ZAnalysis of early changes in DNA methylation in synovial fibroblasts of RA patients before diagnosis10.1038/s41598-018-24240-22045-2322https://doaj.org/article/66ae989f317c47c48a1eb0beaea828382018-05-01T00:00:00Zhttps://doi.org/10.1038/s41598-018-24240-2https://doaj.org/toc/2045-2322Abstract DNA methylation is an important epigenetic modification that is known to be altered in rheumatoid arthritis synovial fibroblasts (RASF). Here, we compared the status of promoter DNA methylation of SF from patients with very early RA with SF from patients with resolving arthritis, fully established RA and from non-arthritic patients. DNA was hybridized to Infinium Human methylation 450k and 850k arrays and differential methylated genes and pathways were identified. We could identify a significant number of CpG sites that differed between the SF of different disease stages, showing that epigenetic changes in SF occur early in RA development. Principal component analysis confirmed that the different groups of SF were separated according to their DNA methylation state. Furthermore, pathway analysis showed that important functional pathways were altered in both very early and late RASF. By focusing our analysis on CpG sites in CpG islands within promoters, we identified genes that have significant hypermethylated promoters in very early RASF. Our data show that changes in DNA methylation differ in RASF compared to other forms of arthritis and occur at a very early, clinically yet unspecific stage of disease. The identified differential methylated genes might become valuable prognostic biomarkers for RA development.Emmanuel KarouzakisKarim RazaChristoph KollingChristopher D. BuckleySteffen GayAndrew FilerCaroline OspeltNature PortfolioarticleMedicineRScienceQENScientific Reports, Vol 8, Iss 1, Pp 1-6 (2018)
institution DOAJ
collection DOAJ
language EN
topic Medicine
R
Science
Q
spellingShingle Medicine
R
Science
Q
Emmanuel Karouzakis
Karim Raza
Christoph Kolling
Christopher D. Buckley
Steffen Gay
Andrew Filer
Caroline Ospelt
Analysis of early changes in DNA methylation in synovial fibroblasts of RA patients before diagnosis
description Abstract DNA methylation is an important epigenetic modification that is known to be altered in rheumatoid arthritis synovial fibroblasts (RASF). Here, we compared the status of promoter DNA methylation of SF from patients with very early RA with SF from patients with resolving arthritis, fully established RA and from non-arthritic patients. DNA was hybridized to Infinium Human methylation 450k and 850k arrays and differential methylated genes and pathways were identified. We could identify a significant number of CpG sites that differed between the SF of different disease stages, showing that epigenetic changes in SF occur early in RA development. Principal component analysis confirmed that the different groups of SF were separated according to their DNA methylation state. Furthermore, pathway analysis showed that important functional pathways were altered in both very early and late RASF. By focusing our analysis on CpG sites in CpG islands within promoters, we identified genes that have significant hypermethylated promoters in very early RASF. Our data show that changes in DNA methylation differ in RASF compared to other forms of arthritis and occur at a very early, clinically yet unspecific stage of disease. The identified differential methylated genes might become valuable prognostic biomarkers for RA development.
format article
author Emmanuel Karouzakis
Karim Raza
Christoph Kolling
Christopher D. Buckley
Steffen Gay
Andrew Filer
Caroline Ospelt
author_facet Emmanuel Karouzakis
Karim Raza
Christoph Kolling
Christopher D. Buckley
Steffen Gay
Andrew Filer
Caroline Ospelt
author_sort Emmanuel Karouzakis
title Analysis of early changes in DNA methylation in synovial fibroblasts of RA patients before diagnosis
title_short Analysis of early changes in DNA methylation in synovial fibroblasts of RA patients before diagnosis
title_full Analysis of early changes in DNA methylation in synovial fibroblasts of RA patients before diagnosis
title_fullStr Analysis of early changes in DNA methylation in synovial fibroblasts of RA patients before diagnosis
title_full_unstemmed Analysis of early changes in DNA methylation in synovial fibroblasts of RA patients before diagnosis
title_sort analysis of early changes in dna methylation in synovial fibroblasts of ra patients before diagnosis
publisher Nature Portfolio
publishDate 2018
url https://doaj.org/article/66ae989f317c47c48a1eb0beaea82838
work_keys_str_mv AT emmanuelkarouzakis analysisofearlychangesindnamethylationinsynovialfibroblastsofrapatientsbeforediagnosis
AT karimraza analysisofearlychangesindnamethylationinsynovialfibroblastsofrapatientsbeforediagnosis
AT christophkolling analysisofearlychangesindnamethylationinsynovialfibroblastsofrapatientsbeforediagnosis
AT christopherdbuckley analysisofearlychangesindnamethylationinsynovialfibroblastsofrapatientsbeforediagnosis
AT steffengay analysisofearlychangesindnamethylationinsynovialfibroblastsofrapatientsbeforediagnosis
AT andrewfiler analysisofearlychangesindnamethylationinsynovialfibroblastsofrapatientsbeforediagnosis
AT carolineospelt analysisofearlychangesindnamethylationinsynovialfibroblastsofrapatientsbeforediagnosis
_version_ 1718394161911037952