Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities
ABSTRACT Microbiome samples are inherently defined by the environment in which they are found. Therefore, data that provide context and enable interpretation of measurements produced from biological samples, often referred to as metadata, are critical. Important contributions have been made in the d...
Guardado en:
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
|---|---|
| Formato: | article |
| Lenguaje: | EN |
| Publicado: |
American Society for Microbiology
2021
|
| Materias: | |
| Acceso en línea: | https://doaj.org/article/70ee1fcbc18e476ebb6a193f72670ad9 |
| Etiquetas: |
Agregar Etiqueta
Sin Etiquetas, Sea el primero en etiquetar este registro!
|
| id |
oai:doaj.org-article:70ee1fcbc18e476ebb6a193f72670ad9 |
|---|---|
| record_format |
dspace |
| spelling |
oai:doaj.org-article:70ee1fcbc18e476ebb6a193f72670ad92021-12-02T19:22:16ZMicrobiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities10.1128/mSystems.01194-202379-5077https://doaj.org/article/70ee1fcbc18e476ebb6a193f72670ad92021-02-01T00:00:00Zhttps://journals.asm.org/doi/10.1128/mSystems.01194-20https://doaj.org/toc/2379-5077ABSTRACT Microbiome samples are inherently defined by the environment in which they are found. Therefore, data that provide context and enable interpretation of measurements produced from biological samples, often referred to as metadata, are critical. Important contributions have been made in the development of community-driven metadata standards; however, these standards have not been uniformly embraced by the microbiome research community. To understand how these standards are being adopted, or the barriers to adoption, across research domains, institutions, and funding agencies, the National Microbiome Data Collaborative (NMDC) hosted a workshop in October 2019. This report provides a summary of discussions that took place throughout the workshop, as well as outcomes of the working groups initiated at the workshop.Pajau VangayJosephine BurginAnjanette JohnstonKristen L. BeckDaniel C. BerriosKai BlumbergShane CanonPatrick ChainJohn-Marc ChandoniaDanielle ChristiansonSylvain V. CostesJoan DamerowWilliam D. DuncanJose Pablo Dundore-AriasKjiersten FagnanJonathan M. GalazkaSean M. GibbonsDavid HaysJudson HerveyBin HuBonnie L. HurwitzPankaj JaiswalMarcin P. JoachimiakLinda KinkelJoshua LadauStanton L. MartinLee Ann McCueKayd MillerNigel MounceyChris MungallEvangelos PafilisT. B. K. ReddyLorna RichardsonSimon RouxLynn M. SchrimlJustin P. ShafferJagadish Chandrabose SundaramurthiLuke R. ThompsonRuth E. TimmeJie ZhengElisha M. Wood-CharlsonEmiley A. Eloe-FadroshAmerican Society for Microbiologyarticledata standardsmetadatamicrobiomeontologyMicrobiologyQR1-502ENmSystems, Vol 6, Iss 1 (2021) |
| institution |
DOAJ |
| collection |
DOAJ |
| language |
EN |
| topic |
data standards metadata microbiome ontology Microbiology QR1-502 |
| spellingShingle |
data standards metadata microbiome ontology Microbiology QR1-502 Pajau Vangay Josephine Burgin Anjanette Johnston Kristen L. Beck Daniel C. Berrios Kai Blumberg Shane Canon Patrick Chain John-Marc Chandonia Danielle Christianson Sylvain V. Costes Joan Damerow William D. Duncan Jose Pablo Dundore-Arias Kjiersten Fagnan Jonathan M. Galazka Sean M. Gibbons David Hays Judson Hervey Bin Hu Bonnie L. Hurwitz Pankaj Jaiswal Marcin P. Joachimiak Linda Kinkel Joshua Ladau Stanton L. Martin Lee Ann McCue Kayd Miller Nigel Mouncey Chris Mungall Evangelos Pafilis T. B. K. Reddy Lorna Richardson Simon Roux Lynn M. Schriml Justin P. Shaffer Jagadish Chandrabose Sundaramurthi Luke R. Thompson Ruth E. Timme Jie Zheng Elisha M. Wood-Charlson Emiley A. Eloe-Fadrosh Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities |
| description |
ABSTRACT Microbiome samples are inherently defined by the environment in which they are found. Therefore, data that provide context and enable interpretation of measurements produced from biological samples, often referred to as metadata, are critical. Important contributions have been made in the development of community-driven metadata standards; however, these standards have not been uniformly embraced by the microbiome research community. To understand how these standards are being adopted, or the barriers to adoption, across research domains, institutions, and funding agencies, the National Microbiome Data Collaborative (NMDC) hosted a workshop in October 2019. This report provides a summary of discussions that took place throughout the workshop, as well as outcomes of the working groups initiated at the workshop. |
| format |
article |
| author |
Pajau Vangay Josephine Burgin Anjanette Johnston Kristen L. Beck Daniel C. Berrios Kai Blumberg Shane Canon Patrick Chain John-Marc Chandonia Danielle Christianson Sylvain V. Costes Joan Damerow William D. Duncan Jose Pablo Dundore-Arias Kjiersten Fagnan Jonathan M. Galazka Sean M. Gibbons David Hays Judson Hervey Bin Hu Bonnie L. Hurwitz Pankaj Jaiswal Marcin P. Joachimiak Linda Kinkel Joshua Ladau Stanton L. Martin Lee Ann McCue Kayd Miller Nigel Mouncey Chris Mungall Evangelos Pafilis T. B. K. Reddy Lorna Richardson Simon Roux Lynn M. Schriml Justin P. Shaffer Jagadish Chandrabose Sundaramurthi Luke R. Thompson Ruth E. Timme Jie Zheng Elisha M. Wood-Charlson Emiley A. Eloe-Fadrosh |
| author_facet |
Pajau Vangay Josephine Burgin Anjanette Johnston Kristen L. Beck Daniel C. Berrios Kai Blumberg Shane Canon Patrick Chain John-Marc Chandonia Danielle Christianson Sylvain V. Costes Joan Damerow William D. Duncan Jose Pablo Dundore-Arias Kjiersten Fagnan Jonathan M. Galazka Sean M. Gibbons David Hays Judson Hervey Bin Hu Bonnie L. Hurwitz Pankaj Jaiswal Marcin P. Joachimiak Linda Kinkel Joshua Ladau Stanton L. Martin Lee Ann McCue Kayd Miller Nigel Mouncey Chris Mungall Evangelos Pafilis T. B. K. Reddy Lorna Richardson Simon Roux Lynn M. Schriml Justin P. Shaffer Jagadish Chandrabose Sundaramurthi Luke R. Thompson Ruth E. Timme Jie Zheng Elisha M. Wood-Charlson Emiley A. Eloe-Fadrosh |
| author_sort |
Pajau Vangay |
| title |
Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities |
| title_short |
Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities |
| title_full |
Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities |
| title_fullStr |
Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities |
| title_full_unstemmed |
Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities |
| title_sort |
microbiome metadata standards: report of the national microbiome data collaborative’s workshop and follow-on activities |
| publisher |
American Society for Microbiology |
| publishDate |
2021 |
| url |
https://doaj.org/article/70ee1fcbc18e476ebb6a193f72670ad9 |
| work_keys_str_mv |
AT pajauvangay microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT josephineburgin microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT anjanettejohnston microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT kristenlbeck microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT danielcberrios microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT kaiblumberg microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT shanecanon microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT patrickchain microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT johnmarcchandonia microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT daniellechristianson microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT sylvainvcostes microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT joandamerow microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT williamdduncan microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT josepablodundorearias microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT kjierstenfagnan microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT jonathanmgalazka microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT seanmgibbons microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT davidhays microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT judsonhervey microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT binhu microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT bonnielhurwitz microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT pankajjaiswal microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT marcinpjoachimiak microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT lindakinkel microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT joshualadau microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT stantonlmartin microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT leeannmccue microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT kaydmiller microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT nigelmouncey microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT chrismungall microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT evangelospafilis microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT tbkreddy microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT lornarichardson microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT simonroux microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT lynnmschriml microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT justinpshaffer microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT jagadishchandrabosesundaramurthi microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT lukerthompson microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT ruthetimme microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT jiezheng microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT elishamwoodcharlson microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities AT emileyaeloefadrosh microbiomemetadatastandardsreportofthenationalmicrobiomedatacollaborativesworkshopandfollowonactivities |
| _version_ |
1718376743454113792 |