Identification of significant chromatin contacts from HiChIP data by FitHiChIP

HiChIP/PLAC-seq assay is popular for profiling 3D genome interactions among regulatory elements at kilobase resolution. Here the authors describe FitHiChIP an empirical null-based, flexible computational method for statistical significance estimation and loop calling from HiChIP data.

Guardado en:

Detalles Bibliográficos
Autores principales:	Sourya Bhattacharyya, Vivek Chandra, Pandurangan Vijayanand, Ferhat Ay
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2019
Materias:	Science Q
Acceso en línea:	https://doaj.org/article/7ef2ca6ec45b488485c5ff25afb3492e
Etiquetas:	Agregar Etiqueta Sin Etiquetas, Sea el primero en etiquetar este registro!

id	oai:doaj.org-article:7ef2ca6ec45b488485c5ff25afb3492e
record_format	dspace
spelling	oai:doaj.org-article:7ef2ca6ec45b488485c5ff25afb3492e2021-12-02T14:38:43ZIdentification of significant chromatin contacts from HiChIP data by FitHiChIP10.1038/s41467-019-11950-y2041-1723https://doaj.org/article/7ef2ca6ec45b488485c5ff25afb3492e2019-09-01T00:00:00Zhttps://doi.org/10.1038/s41467-019-11950-yhttps://doaj.org/toc/2041-1723HiChIP/PLAC-seq assay is popular for profiling 3D genome interactions among regulatory elements at kilobase resolution. Here the authors describe FitHiChIP an empirical null-based, flexible computational method for statistical significance estimation and loop calling from HiChIP data.Sourya BhattacharyyaVivek ChandraPandurangan VijayanandFerhat AyNature PortfolioarticleScienceQENNature Communications, Vol 10, Iss 1, Pp 1-14 (2019)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q Sourya Bhattacharyya Vivek Chandra Pandurangan Vijayanand Ferhat Ay Identification of significant chromatin contacts from HiChIP data by FitHiChIP
description	HiChIP/PLAC-seq assay is popular for profiling 3D genome interactions among regulatory elements at kilobase resolution. Here the authors describe FitHiChIP an empirical null-based, flexible computational method for statistical significance estimation and loop calling from HiChIP data.
format	article
author	Sourya Bhattacharyya Vivek Chandra Pandurangan Vijayanand Ferhat Ay
author_facet	Sourya Bhattacharyya Vivek Chandra Pandurangan Vijayanand Ferhat Ay
author_sort	Sourya Bhattacharyya
title	Identification of significant chromatin contacts from HiChIP data by FitHiChIP
title_short	Identification of significant chromatin contacts from HiChIP data by FitHiChIP
title_full	Identification of significant chromatin contacts from HiChIP data by FitHiChIP
title_fullStr	Identification of significant chromatin contacts from HiChIP data by FitHiChIP
title_full_unstemmed	Identification of significant chromatin contacts from HiChIP data by FitHiChIP
title_sort	identification of significant chromatin contacts from hichip data by fithichip
publisher	Nature Portfolio
publishDate	2019
url	https://doaj.org/article/7ef2ca6ec45b488485c5ff25afb3492e
work_keys_str_mv	AT souryabhattacharyya identificationofsignificantchromatincontactsfromhichipdatabyfithichip AT vivekchandra identificationofsignificantchromatincontactsfromhichipdatabyfithichip AT panduranganvijayanand identificationofsignificantchromatincontactsfromhichipdatabyfithichip AT ferhatay identificationofsignificantchromatincontactsfromhichipdatabyfithichip
_version_	1718390904425807872

Identification of significant chromatin contacts from HiChIP data by FitHiChIP

Ejemplares similares