The art of using t-SNE for single-cell transcriptomics

t-SNE is widely used for dimensionality reduction and visualization of high-dimensional single-cell data. Here, the authors introduce a protocol to help avoid common shortcomings of t-SNE, for example, enabling preservation of the global structure of the data.

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Detalles Bibliográficos
Autores principales:	Dmitry Kobak, Philipp Berens
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2019
Materias:	Science Q
Acceso en línea:	https://doaj.org/article/b26f011209eb4d4294d5ab8dd1fde844
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spelling	oai:doaj.org-article:b26f011209eb4d4294d5ab8dd1fde8442021-12-02T16:58:01ZThe art of using t-SNE for single-cell transcriptomics10.1038/s41467-019-13056-x2041-1723https://doaj.org/article/b26f011209eb4d4294d5ab8dd1fde8442019-11-01T00:00:00Zhttps://doi.org/10.1038/s41467-019-13056-xhttps://doaj.org/toc/2041-1723t-SNE is widely used for dimensionality reduction and visualization of high-dimensional single-cell data. Here, the authors introduce a protocol to help avoid common shortcomings of t-SNE, for example, enabling preservation of the global structure of the data.Dmitry KobakPhilipp BerensNature PortfolioarticleScienceQENNature Communications, Vol 10, Iss 1, Pp 1-14 (2019)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q Dmitry Kobak Philipp Berens The art of using t-SNE for single-cell transcriptomics
description	t-SNE is widely used for dimensionality reduction and visualization of high-dimensional single-cell data. Here, the authors introduce a protocol to help avoid common shortcomings of t-SNE, for example, enabling preservation of the global structure of the data.
format	article
author	Dmitry Kobak Philipp Berens
author_facet	Dmitry Kobak Philipp Berens
author_sort	Dmitry Kobak
title	The art of using t-SNE for single-cell transcriptomics
title_short	The art of using t-SNE for single-cell transcriptomics
title_full	The art of using t-SNE for single-cell transcriptomics
title_fullStr	The art of using t-SNE for single-cell transcriptomics
title_full_unstemmed	The art of using t-SNE for single-cell transcriptomics
title_sort	art of using t-sne for single-cell transcriptomics
publisher	Nature Portfolio
publishDate	2019
url	https://doaj.org/article/b26f011209eb4d4294d5ab8dd1fde844
work_keys_str_mv	AT dmitrykobak theartofusingtsneforsinglecelltranscriptomics AT philippberens theartofusingtsneforsinglecelltranscriptomics AT dmitrykobak artofusingtsneforsinglecelltranscriptomics AT philippberens artofusingtsneforsinglecelltranscriptomics
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The art of using t-SNE for single-cell transcriptomics

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