Field multi-omics analysis reveals a close association between bacterial communities and mineral properties in the soybean rhizosphere
Abstract The plant root-associated environments such as the rhizosphere, rhizoplane, and endosphere are different from the outer soil region (bulk soil). They establish characteristic conditions including microbiota, metabolites, and minerals, and they can directly affect plant growth and developmen...
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2021
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oai:doaj.org-article:c337cb0dc11842129f2db3d3e62e10822021-12-02T17:32:58ZField multi-omics analysis reveals a close association between bacterial communities and mineral properties in the soybean rhizosphere10.1038/s41598-021-87384-82045-2322https://doaj.org/article/c337cb0dc11842129f2db3d3e62e10822021-04-01T00:00:00Zhttps://doi.org/10.1038/s41598-021-87384-8https://doaj.org/toc/2045-2322Abstract The plant root-associated environments such as the rhizosphere, rhizoplane, and endosphere are different from the outer soil region (bulk soil). They establish characteristic conditions including microbiota, metabolites, and minerals, and they can directly affect plant growth and development. However, comprehensive insights into those characteristic environments, especially the rhizosphere, and molecular mechanisms of their formation are not well understood. In the present study, we investigated the spatiotemporal dynamics of the root-associated environment in actual field conditions by multi-omics analyses (mineral, microbiome, and transcriptome) of soybean plants. Mineral and microbiome analyses demonstrated a characteristic rhizosphere environment in which most of the minerals were highly accumulated and bacterial communities were distinct from those in the bulk soil. Mantel’s test and co-abundance network analysis revealed that characteristic community structures and dominant bacterial taxa in the rhizosphere significantly interact with mineral contents in the rhizosphere, but not in the bulk soil. Our field multi-omics analysis suggests a rhizosphere-specific close association between the microbiota and mineral environment.Shinichi YamazakiHossein Mardani-korraniRumi KaidaKumiko OchiaiMasaru KobayashiAtsushi J. NaganoYoshiharu FujiiAkifumi SugiyamaYuichi AokiNature PortfolioarticleMedicineRScienceQENScientific Reports, Vol 11, Iss 1, Pp 1-16 (2021) |
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Medicine R Science Q Shinichi Yamazaki Hossein Mardani-korrani Rumi Kaida Kumiko Ochiai Masaru Kobayashi Atsushi J. Nagano Yoshiharu Fujii Akifumi Sugiyama Yuichi Aoki Field multi-omics analysis reveals a close association between bacterial communities and mineral properties in the soybean rhizosphere |
| description |
Abstract The plant root-associated environments such as the rhizosphere, rhizoplane, and endosphere are different from the outer soil region (bulk soil). They establish characteristic conditions including microbiota, metabolites, and minerals, and they can directly affect plant growth and development. However, comprehensive insights into those characteristic environments, especially the rhizosphere, and molecular mechanisms of their formation are not well understood. In the present study, we investigated the spatiotemporal dynamics of the root-associated environment in actual field conditions by multi-omics analyses (mineral, microbiome, and transcriptome) of soybean plants. Mineral and microbiome analyses demonstrated a characteristic rhizosphere environment in which most of the minerals were highly accumulated and bacterial communities were distinct from those in the bulk soil. Mantel’s test and co-abundance network analysis revealed that characteristic community structures and dominant bacterial taxa in the rhizosphere significantly interact with mineral contents in the rhizosphere, but not in the bulk soil. Our field multi-omics analysis suggests a rhizosphere-specific close association between the microbiota and mineral environment. |
| format |
article |
| author |
Shinichi Yamazaki Hossein Mardani-korrani Rumi Kaida Kumiko Ochiai Masaru Kobayashi Atsushi J. Nagano Yoshiharu Fujii Akifumi Sugiyama Yuichi Aoki |
| author_facet |
Shinichi Yamazaki Hossein Mardani-korrani Rumi Kaida Kumiko Ochiai Masaru Kobayashi Atsushi J. Nagano Yoshiharu Fujii Akifumi Sugiyama Yuichi Aoki |
| author_sort |
Shinichi Yamazaki |
| title |
Field multi-omics analysis reveals a close association between bacterial communities and mineral properties in the soybean rhizosphere |
| title_short |
Field multi-omics analysis reveals a close association between bacterial communities and mineral properties in the soybean rhizosphere |
| title_full |
Field multi-omics analysis reveals a close association between bacterial communities and mineral properties in the soybean rhizosphere |
| title_fullStr |
Field multi-omics analysis reveals a close association between bacterial communities and mineral properties in the soybean rhizosphere |
| title_full_unstemmed |
Field multi-omics analysis reveals a close association between bacterial communities and mineral properties in the soybean rhizosphere |
| title_sort |
field multi-omics analysis reveals a close association between bacterial communities and mineral properties in the soybean rhizosphere |
| publisher |
Nature Portfolio |
| publishDate |
2021 |
| url |
https://doaj.org/article/c337cb0dc11842129f2db3d3e62e1082 |
| work_keys_str_mv |
AT shinichiyamazaki fieldmultiomicsanalysisrevealsacloseassociationbetweenbacterialcommunitiesandmineralpropertiesinthesoybeanrhizosphere AT hosseinmardanikorrani fieldmultiomicsanalysisrevealsacloseassociationbetweenbacterialcommunitiesandmineralpropertiesinthesoybeanrhizosphere AT rumikaida fieldmultiomicsanalysisrevealsacloseassociationbetweenbacterialcommunitiesandmineralpropertiesinthesoybeanrhizosphere AT kumikoochiai fieldmultiomicsanalysisrevealsacloseassociationbetweenbacterialcommunitiesandmineralpropertiesinthesoybeanrhizosphere AT masarukobayashi fieldmultiomicsanalysisrevealsacloseassociationbetweenbacterialcommunitiesandmineralpropertiesinthesoybeanrhizosphere AT atsushijnagano fieldmultiomicsanalysisrevealsacloseassociationbetweenbacterialcommunitiesandmineralpropertiesinthesoybeanrhizosphere AT yoshiharufujii fieldmultiomicsanalysisrevealsacloseassociationbetweenbacterialcommunitiesandmineralpropertiesinthesoybeanrhizosphere AT akifumisugiyama fieldmultiomicsanalysisrevealsacloseassociationbetweenbacterialcommunitiesandmineralpropertiesinthesoybeanrhizosphere AT yuichiaoki fieldmultiomicsanalysisrevealsacloseassociationbetweenbacterialcommunitiesandmineralpropertiesinthesoybeanrhizosphere |
| _version_ |
1718380147240861696 |