Evaluating whole-genome sequencing quality metrics for enteric pathogen outbreaks

Background Whole genome sequencing (WGS) has gained increasing importance in responses to enteric bacterial outbreaks. Common analysis procedures for WGS, single nucleotide polymorphisms (SNPs) and genome assembly, are highly dependent upon WGS data quality. Methods Raw, unprocessed WGS reads from E...

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Autores principales: Darlene D. Wagner, Heather A. Carleton, Eija Trees, Lee S. Katz
Formato: article
Lenguaje:EN
Publicado: PeerJ Inc. 2021
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SNP
R
Acceso en línea:https://doaj.org/article/ca440bb680684ba09abb720b0731d66d
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