Coat protein gene of a PStV-Bm isolate from West Nusa Tenggara, Indonesia

Abstract. Julisaniah NI, Suharjono, Mastuti R, Arumingtyas EL. 2020. Coat protein gene of a PStV-Bm isolate from West Nusa Tenggara, Indonesia. Biodiversitas 21: 903-909. Peanut stripe virus (PStV) is a single-stranded positive-sense RNA virus capable of infecting peanut plants. An isolate of PStV (...

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Autores principales:	Nur Indah Julisaniah, SUHARJONO, RETNO MASTUTI, ESTRI LARAS ARUMINGTYAS
Formato:	article
Lenguaje:	EN
Publicado:	MBI & UNS Solo 2020
Materias:	coat protein gene, genetic relationship, peanut stripe virus, west nusa tenggara Biology (General) QH301-705.5
Acceso en línea:	https://doaj.org/article/cbe07c2b056a4df9b3d5c038beb2412c
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spelling	oai:doaj.org-article:cbe07c2b056a4df9b3d5c038beb2412c2021-11-22T00:28:56ZCoat protein gene of a PStV-Bm isolate from West Nusa Tenggara, Indonesia1412-033X2085-472210.13057/biodiv/d210308https://doaj.org/article/cbe07c2b056a4df9b3d5c038beb2412c2020-02-01T00:00:00Zhttps://smujo.id/biodiv/article/view/4970https://doaj.org/toc/1412-033Xhttps://doaj.org/toc/2085-4722Abstract. Julisaniah NI, Suharjono, Mastuti R, Arumingtyas EL. 2020. Coat protein gene of a PStV-Bm isolate from West Nusa Tenggara, Indonesia. Biodiversitas 21: 903-909. Peanut stripe virus (PStV) is a single-stranded positive-sense RNA virus capable of infecting peanut plants. An isolate of PStV (PStV-Bm) was collected from a peanut field in the Bima District, West Nusa Tenggara Province, Indonesia and the coat protein (CP) gene of this virus (CP-PStV) was extracted from the viral RNA and analyzed using reverse transcription-polymerase chain reaction methods. The CP-PStV gene of PStV-Bm was aligned with several PStV genes deposited in the Genbank (http://www.ncbi.nml.nih.gov). Based on the nucleotide sequence of the CP gene, PStV-Bm was grouped into a similar cluster with other PStVs that originated from Indonesia with a similar index, ranging from 96.8% to 98.9%. Genetic similarity (about 96.1%) was also observed between PStV-Bm and PStV from the USA. This genetic similarity indicated that viruses from adjacent regions have high genetic relationships. Some amino acid differences were observed in PStV-Bm that may be typical of this strain.Nur Indah JulisaniahSUHARJONORETNO MASTUTIESTRI LARAS ARUMINGTYASMBI & UNS Soloarticlecoat protein gene, genetic relationship, peanut stripe virus, west nusa tenggaraBiology (General)QH301-705.5ENBiodiversitas, Vol 21, Iss 3 (2020)
institution	DOAJ
collection	DOAJ
language	EN
topic	coat protein gene, genetic relationship, peanut stripe virus, west nusa tenggara Biology (General) QH301-705.5
spellingShingle	coat protein gene, genetic relationship, peanut stripe virus, west nusa tenggara Biology (General) QH301-705.5 Nur Indah Julisaniah SUHARJONO RETNO MASTUTI ESTRI LARAS ARUMINGTYAS Coat protein gene of a PStV-Bm isolate from West Nusa Tenggara, Indonesia
description	Abstract. Julisaniah NI, Suharjono, Mastuti R, Arumingtyas EL. 2020. Coat protein gene of a PStV-Bm isolate from West Nusa Tenggara, Indonesia. Biodiversitas 21: 903-909. Peanut stripe virus (PStV) is a single-stranded positive-sense RNA virus capable of infecting peanut plants. An isolate of PStV (PStV-Bm) was collected from a peanut field in the Bima District, West Nusa Tenggara Province, Indonesia and the coat protein (CP) gene of this virus (CP-PStV) was extracted from the viral RNA and analyzed using reverse transcription-polymerase chain reaction methods. The CP-PStV gene of PStV-Bm was aligned with several PStV genes deposited in the Genbank (http://www.ncbi.nml.nih.gov). Based on the nucleotide sequence of the CP gene, PStV-Bm was grouped into a similar cluster with other PStVs that originated from Indonesia with a similar index, ranging from 96.8% to 98.9%. Genetic similarity (about 96.1%) was also observed between PStV-Bm and PStV from the USA. This genetic similarity indicated that viruses from adjacent regions have high genetic relationships. Some amino acid differences were observed in PStV-Bm that may be typical of this strain.
format	article
author	Nur Indah Julisaniah SUHARJONO RETNO MASTUTI ESTRI LARAS ARUMINGTYAS
author_facet	Nur Indah Julisaniah SUHARJONO RETNO MASTUTI ESTRI LARAS ARUMINGTYAS
author_sort	Nur Indah Julisaniah
title	Coat protein gene of a PStV-Bm isolate from West Nusa Tenggara, Indonesia
title_short	Coat protein gene of a PStV-Bm isolate from West Nusa Tenggara, Indonesia
title_full	Coat protein gene of a PStV-Bm isolate from West Nusa Tenggara, Indonesia
title_fullStr	Coat protein gene of a PStV-Bm isolate from West Nusa Tenggara, Indonesia
title_full_unstemmed	Coat protein gene of a PStV-Bm isolate from West Nusa Tenggara, Indonesia
title_sort	coat protein gene of a pstv-bm isolate from west nusa tenggara, indonesia
publisher	MBI & UNS Solo
publishDate	2020
url	https://doaj.org/article/cbe07c2b056a4df9b3d5c038beb2412c
work_keys_str_mv	AT nurindahjulisaniah coatproteingeneofapstvbmisolatefromwestnusatenggaraindonesia AT suharjono coatproteingeneofapstvbmisolatefromwestnusatenggaraindonesia AT retnomastuti coatproteingeneofapstvbmisolatefromwestnusatenggaraindonesia AT estrilarasarumingtyas coatproteingeneofapstvbmisolatefromwestnusatenggaraindonesia
_version_	1718418608278732800

Coat protein gene of a PStV-Bm isolate from West Nusa Tenggara, Indonesia

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