An integrative ENCODE resource for cancer genomics

An integrative ENCODE resource for cancer genomics

ENCODE is a resource comprising thousands of functional genomic datasets. Here, the authors present custom annotation within ENCODE for cancer, highlighting a workflow that can help prioritise key elements in oncogenesis.

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Autores principales: Jing Zhang, Donghoon Lee, Vineet Dhiman, Peng Jiang, Jie Xu, Patrick McGillivray, Hongbo Yang, Jason Liu, William Meyerson, Declan Clarke, Mengting Gu, Shantao Li, Shaoke Lou, Jinrui Xu, Lucas Lochovsky, Matthew Ung, Lijia Ma, Shan Yu, Qin Cao, Arif Harmanci, Koon-Kiu Yan, Anurag Sethi, Gamze Gürsoy, Michael Rutenberg Schoenberg, Joel Rozowsky, Jonathan Warrell, Prashant Emani, Yucheng T. Yang, Timur Galeev, Xiangmeng Kong, Shuang Liu, Xiaotong Li, Jayanth Krishnan, Yanlin Feng, Juan Carlos Rivera-Mulia, Jessica Adrian, James R Broach, Michael Bolt, Jennifer Moran, Dominic Fitzgerald, Vishnu Dileep, Tingting Liu, Shenglin Mei, Takayo Sasaki, Claudia Trevilla-Garcia, Su Wang, Yanli Wang, Chongzhi Zang, Daifeng Wang, Robert J. Klein, Michael Snyder, David M. Gilbert, Kevin Yip, Chao Cheng, Feng Yue, X. Shirley Liu, Kevin P. White, Mark Gerstein
Formato: article
Lenguaje:EN
Publicado: Nature Portfolio 2020
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Acceso en línea:https://doaj.org/article/d3ef1766b33842a5aa6bd3194efeba4e
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spelling oai:doaj.org-article:d3ef1766b33842a5aa6bd3194efeba4e2021-12-02T16:31:53ZAn integrative ENCODE resource for cancer genomics10.1038/s41467-020-14743-w2041-1723https://doaj.org/article/d3ef1766b33842a5aa6bd3194efeba4e2020-07-01T00:00:00Zhttps://doi.org/10.1038/s41467-020-14743-whttps://doaj.org/toc/2041-1723ENCODE is a resource comprising thousands of functional genomic datasets. Here, the authors present custom annotation within ENCODE for cancer, highlighting a workflow that can help prioritise key elements in oncogenesis.Jing ZhangDonghoon LeeVineet DhimanPeng JiangJie XuPatrick McGillivrayHongbo YangJason LiuWilliam MeyersonDeclan ClarkeMengting GuShantao LiShaoke LouJinrui XuLucas LochovskyMatthew UngLijia MaShan YuQin CaoArif HarmanciKoon-Kiu YanAnurag SethiGamze GürsoyMichael Rutenberg SchoenbergJoel RozowskyJonathan WarrellPrashant EmaniYucheng T. YangTimur GaleevXiangmeng KongShuang LiuXiaotong LiJayanth KrishnanYanlin FengJuan Carlos Rivera-MuliaJessica AdrianJames R BroachMichael BoltJennifer MoranDominic FitzgeraldVishnu DileepTingting LiuShenglin MeiTakayo SasakiClaudia Trevilla-GarciaSu WangYanli WangChongzhi ZangDaifeng WangRobert J. KleinMichael SnyderDavid M. GilbertKevin YipChao ChengFeng YueX. Shirley LiuKevin P. WhiteMark GersteinNature PortfolioarticleScienceQENNature Communications, Vol 11, Iss 1, Pp 1-11 (2020)
institution DOAJ
collection DOAJ
language EN
topic Science
Q
spellingShingle Science
Q
Jing Zhang
Donghoon Lee
Vineet Dhiman
Peng Jiang
Jie Xu
Patrick McGillivray
Hongbo Yang
Jason Liu
William Meyerson
Declan Clarke
Mengting Gu
Shantao Li
Shaoke Lou
Jinrui Xu
Lucas Lochovsky
Matthew Ung
Lijia Ma
Shan Yu
Qin Cao
Arif Harmanci
Koon-Kiu Yan
Anurag Sethi
Gamze Gürsoy
Michael Rutenberg Schoenberg
Joel Rozowsky
Jonathan Warrell
Prashant Emani
Yucheng T. Yang
Timur Galeev
Xiangmeng Kong
Shuang Liu
Xiaotong Li
Jayanth Krishnan
Yanlin Feng
Juan Carlos Rivera-Mulia
Jessica Adrian
James R Broach
Michael Bolt
Jennifer Moran
Dominic Fitzgerald
Vishnu Dileep
Tingting Liu
Shenglin Mei
Takayo Sasaki
Claudia Trevilla-Garcia
Su Wang
Yanli Wang
Chongzhi Zang
Daifeng Wang
Robert J. Klein
Michael Snyder
David M. Gilbert
Kevin Yip
Chao Cheng
Feng Yue
X. Shirley Liu
Kevin P. White
Mark Gerstein
An integrative ENCODE resource for cancer genomics
description ENCODE is a resource comprising thousands of functional genomic datasets. Here, the authors present custom annotation within ENCODE for cancer, highlighting a workflow that can help prioritise key elements in oncogenesis.
format article
author Jing Zhang
Donghoon Lee
Vineet Dhiman
Peng Jiang
Jie Xu
Patrick McGillivray
Hongbo Yang
Jason Liu
William Meyerson
Declan Clarke
Mengting Gu
Shantao Li
Shaoke Lou
Jinrui Xu
Lucas Lochovsky
Matthew Ung
Lijia Ma
Shan Yu
Qin Cao
Arif Harmanci
Koon-Kiu Yan
Anurag Sethi
Gamze Gürsoy
Michael Rutenberg Schoenberg
Joel Rozowsky
Jonathan Warrell
Prashant Emani
Yucheng T. Yang
Timur Galeev
Xiangmeng Kong
Shuang Liu
Xiaotong Li
Jayanth Krishnan
Yanlin Feng
Juan Carlos Rivera-Mulia
Jessica Adrian
James R Broach
Michael Bolt
Jennifer Moran
Dominic Fitzgerald
Vishnu Dileep
Tingting Liu
Shenglin Mei
Takayo Sasaki
Claudia Trevilla-Garcia
Su Wang
Yanli Wang
Chongzhi Zang
Daifeng Wang
Robert J. Klein
Michael Snyder
David M. Gilbert
Kevin Yip
Chao Cheng
Feng Yue
X. Shirley Liu
Kevin P. White
Mark Gerstein
author_facet Jing Zhang
Donghoon Lee
Vineet Dhiman
Peng Jiang
Jie Xu
Patrick McGillivray
Hongbo Yang
Jason Liu
William Meyerson
Declan Clarke
Mengting Gu
Shantao Li
Shaoke Lou
Jinrui Xu
Lucas Lochovsky
Matthew Ung
Lijia Ma
Shan Yu
Qin Cao
Arif Harmanci
Koon-Kiu Yan
Anurag Sethi
Gamze Gürsoy
Michael Rutenberg Schoenberg
Joel Rozowsky
Jonathan Warrell
Prashant Emani
Yucheng T. Yang
Timur Galeev
Xiangmeng Kong
Shuang Liu
Xiaotong Li
Jayanth Krishnan
Yanlin Feng
Juan Carlos Rivera-Mulia
Jessica Adrian
James R Broach
Michael Bolt
Jennifer Moran
Dominic Fitzgerald
Vishnu Dileep
Tingting Liu
Shenglin Mei
Takayo Sasaki
Claudia Trevilla-Garcia
Su Wang
Yanli Wang
Chongzhi Zang
Daifeng Wang
Robert J. Klein
Michael Snyder
David M. Gilbert
Kevin Yip
Chao Cheng
Feng Yue
X. Shirley Liu
Kevin P. White
Mark Gerstein
author_sort Jing Zhang
title An integrative ENCODE resource for cancer genomics
title_short An integrative ENCODE resource for cancer genomics
title_full An integrative ENCODE resource for cancer genomics
title_fullStr An integrative ENCODE resource for cancer genomics
title_full_unstemmed An integrative ENCODE resource for cancer genomics
title_sort integrative encode resource for cancer genomics
publisher Nature Portfolio
publishDate 2020
url https://doaj.org/article/d3ef1766b33842a5aa6bd3194efeba4e
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