Characterization of Indonesian pigmented rice (Oryza sativa) based on morphology and Single Nucleotide Polymorphisms

Abstract. Kurniasih NS, Susandarini R, Susanto FA, Nuringtyas TR, Jenkins G, Purwestri YA. 2019. Characterization of Indonesian pigmented rice (Oryza sativa) based on morphology and Single Nucleotide Polymorphisms. Biodiversitas 20: 1208-1214. Indonesia has many cultivars of pigmented rice, but many...

Descripción completa

Guardado en:

Detalles Bibliográficos
Autores principales:	NUR SITI KURNIASIH, RATNA SUSANDARINI, FEBRI ADI SUSANTO, TRI RINI NURINGTYAS, GLYN JENKINS, YEKTI ASIH PURWESTRI
Formato:	article
Lenguaje:	EN
Publicado:	MBI & UNS Solo 2019
Materias:	morphological and molecular characterization, oryza sativa l., pigmented rice, snp markers Biology (General) QH301-705.5
Acceso en línea:	https://doaj.org/article/ff63c5eaefef43bb81908a37c27d6dbc
Etiquetas:	Agregar Etiqueta Sin Etiquetas, Sea el primero en etiquetar este registro!

id	oai:doaj.org-article:ff63c5eaefef43bb81908a37c27d6dbc
record_format	dspace
spelling	oai:doaj.org-article:ff63c5eaefef43bb81908a37c27d6dbc2021-11-21T21:40:38ZCharacterization of Indonesian pigmented rice (Oryza sativa) based on morphology and Single Nucleotide Polymorphisms1412-033X2085-472210.13057/biodiv/d200437https://doaj.org/article/ff63c5eaefef43bb81908a37c27d6dbc2019-04-01T00:00:00Zhttps://smujo.id/biodiv/article/view/3604https://doaj.org/toc/1412-033Xhttps://doaj.org/toc/2085-4722Abstract. Kurniasih NS, Susandarini R, Susanto FA, Nuringtyas TR, Jenkins G, Purwestri YA. 2019. Characterization of Indonesian pigmented rice (Oryza sativa) based on morphology and Single Nucleotide Polymorphisms. Biodiversitas 20: 1208-1214. Indonesia has many cultivars of pigmented rice, but many variants have not been characterized using morphological characters and molecular markers. SNPs (Single Nucleotide polymorphisms) have been used in previous studies to identify the Indica and Japonica subspecies. Characterization of whether a line belongs to the Indica or Japonica subspecies is useful information for rice breeders, especially to generate line exhibiting the strong hybrid vigor. Morphological characters are used to determine the relationship between cultivars using cluster analysis. The SNP markers were amplified by PCR, sequenced and compared with sequences in the GenBank. Based on morphological characters, ten cultivars divide into two clusters. SNPs distinguish Indica and Japonica subspecies, and show that Hitam Lampung, Aek Sibundong, Melik, Hitam Toraja, Merah Kalimantan, and Merah Sumbawa belong to the Indica subspecies while Cempo Ireng and Pare Eja belong to Japonica. Abang Segreng and Hitam Toraja could not be clearly assigned to either the Indica or Japonica subspecies.NUR SITI KURNIASIHRATNA SUSANDARINIFEBRI ADI SUSANTOTRI RINI NURINGTYASGLYN JENKINSYEKTI ASIH PURWESTRIMBI & UNS Soloarticlemorphological and molecular characterization, oryza sativa l., pigmented rice, snp markersBiology (General)QH301-705.5ENBiodiversitas, Vol 20, Iss 4, Pp 1208-1214 (2019)
institution	DOAJ
collection	DOAJ
language	EN
topic	morphological and molecular characterization, oryza sativa l., pigmented rice, snp markers Biology (General) QH301-705.5
spellingShingle	morphological and molecular characterization, oryza sativa l., pigmented rice, snp markers Biology (General) QH301-705.5 NUR SITI KURNIASIH RATNA SUSANDARINI FEBRI ADI SUSANTO TRI RINI NURINGTYAS GLYN JENKINS YEKTI ASIH PURWESTRI Characterization of Indonesian pigmented rice (Oryza sativa) based on morphology and Single Nucleotide Polymorphisms
description	Abstract. Kurniasih NS, Susandarini R, Susanto FA, Nuringtyas TR, Jenkins G, Purwestri YA. 2019. Characterization of Indonesian pigmented rice (Oryza sativa) based on morphology and Single Nucleotide Polymorphisms. Biodiversitas 20: 1208-1214. Indonesia has many cultivars of pigmented rice, but many variants have not been characterized using morphological characters and molecular markers. SNPs (Single Nucleotide polymorphisms) have been used in previous studies to identify the Indica and Japonica subspecies. Characterization of whether a line belongs to the Indica or Japonica subspecies is useful information for rice breeders, especially to generate line exhibiting the strong hybrid vigor. Morphological characters are used to determine the relationship between cultivars using cluster analysis. The SNP markers were amplified by PCR, sequenced and compared with sequences in the GenBank. Based on morphological characters, ten cultivars divide into two clusters. SNPs distinguish Indica and Japonica subspecies, and show that Hitam Lampung, Aek Sibundong, Melik, Hitam Toraja, Merah Kalimantan, and Merah Sumbawa belong to the Indica subspecies while Cempo Ireng and Pare Eja belong to Japonica. Abang Segreng and Hitam Toraja could not be clearly assigned to either the Indica or Japonica subspecies.
format	article
author	NUR SITI KURNIASIH RATNA SUSANDARINI FEBRI ADI SUSANTO TRI RINI NURINGTYAS GLYN JENKINS YEKTI ASIH PURWESTRI
author_facet	NUR SITI KURNIASIH RATNA SUSANDARINI FEBRI ADI SUSANTO TRI RINI NURINGTYAS GLYN JENKINS YEKTI ASIH PURWESTRI
author_sort	NUR SITI KURNIASIH
title	Characterization of Indonesian pigmented rice (Oryza sativa) based on morphology and Single Nucleotide Polymorphisms
title_short	Characterization of Indonesian pigmented rice (Oryza sativa) based on morphology and Single Nucleotide Polymorphisms
title_full	Characterization of Indonesian pigmented rice (Oryza sativa) based on morphology and Single Nucleotide Polymorphisms
title_fullStr	Characterization of Indonesian pigmented rice (Oryza sativa) based on morphology and Single Nucleotide Polymorphisms
title_full_unstemmed	Characterization of Indonesian pigmented rice (Oryza sativa) based on morphology and Single Nucleotide Polymorphisms
title_sort	characterization of indonesian pigmented rice (oryza sativa) based on morphology and single nucleotide polymorphisms
publisher	MBI & UNS Solo
publishDate	2019
url	https://doaj.org/article/ff63c5eaefef43bb81908a37c27d6dbc
work_keys_str_mv	AT nursitikurniasih characterizationofindonesianpigmentedriceoryzasativabasedonmorphologyandsinglenucleotidepolymorphisms AT ratnasusandarini characterizationofindonesianpigmentedriceoryzasativabasedonmorphologyandsinglenucleotidepolymorphisms AT febriadisusanto characterizationofindonesianpigmentedriceoryzasativabasedonmorphologyandsinglenucleotidepolymorphisms AT tririninuringtyas characterizationofindonesianpigmentedriceoryzasativabasedonmorphologyandsinglenucleotidepolymorphisms AT glynjenkins characterizationofindonesianpigmentedriceoryzasativabasedonmorphologyandsinglenucleotidepolymorphisms AT yektiasihpurwestri characterizationofindonesianpigmentedriceoryzasativabasedonmorphologyandsinglenucleotidepolymorphisms
_version_	1718418742834102272

Characterization of Indonesian pigmented rice (Oryza sativa) based on morphology and Single Nucleotide Polymorphisms

Ejemplares similares