Sizing Up the Uncultured Microbial Majority

por Laura A. Hug
Publicado 2018

Ultrahigh-Throughput Multiplexing and Sequencing of >500-Base-Pair Amplicon Regions on the Illumina HiSeq 2500 Platform

por Johanna B. Holm, Michael S. Humphrys, Courtney K. Robinson, Matthew L. Settles, Sandra Ott, Li Fu, Hongqiu Yang, Pawel Gajer, Xin He, Elias McComb, Patti E. Gravitt, Khalil G. Ghanem, Rebecca M. Brotman, Jacques Ravel
Publicado 2019

Effect of Chicken Manure-Based Fertiliser on Bacterial Communities and Diversity of Tomato Endosphere Microbiota

por Haq Hafeez Ul, Li Ye, Jin Lingyue, Zhang Ting, Cheng Linjie, Li Zhe, Tian Baoyu
Publicado 2021

Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information

por Stefan Janssen, Daniel McDonald, Antonio Gonzalez, Jose A. Navas-Molina, Lingjing Jiang, Zhenjiang Zech Xu, Kevin Winker, Deborah M. Kado, Eric Orwoll, Mark Manary, Siavash Mirarab, Rob Knight
Publicado 2018

Strategies for Building Computing Skills To Support Microbiome Analysis: a Five-Year Perspective from the EDAMAME Workshop

por Ashley Shade, Taylor K. Dunivin, Jinlyung Choi, Tracy K. Teal, Adina C. Howe
Publicado 2019

Complementing 16S rRNA Gene Amplicon Sequencing with Total Bacterial Load To Infer Absolute Species Concentrations in the Vaginal Microbiome

por Florencia A. Tettamanti Boshier, Sujatha Srinivasan, Anthony Lopez, Noah G. Hoffman, Sean Proll, David N. Fredricks, Joshua T. Schiffer
Publicado 2020

PacBio Amplicon Sequencing Method To Measure Pilin Antigenic Variation Frequencies of <named-content content-type="genus-species">Neisseria gonorrhoeae</named-content>

por Egon A. Ozer, Lauren L. Prister, Shaohui Yin, Billy H. Ward, Stanimir Ivanov, H Steven Seifert
Publicado 2019

Bacterial diversity and community structure along the glacier foreland of Midtre Lovénbreen, Svalbard, Arctic

por Siddarthan Venkatachalam, Vatharamattathil Mohanan Kannan, Vadakke Neelamanakesavan Saritha, Dinesh Sanka Loganathachetti, Mahesh Mohan, Kottekkatu Padinchati Krishnan
Publicado 2021

ecc_finder: A Robust and Accurate Tool for Detecting Extrachromosomal Circular DNA From Sequencing Data

por Panpan Zhang, Panpan Zhang, Haoran Peng, Haoran Peng, Christel Llauro, Christel Llauro, Etienne Bucher, Marie Mirouze, Marie Mirouze
Publicado 2021

The Dominating Role of Genetic Background in Shaping Gut Microbiota of Honeybee Queen Over Environmental Factors

por Jiandong Yang, Yun Zhong, Liqun Xu, Bo Zeng, Kang Lai, Mingxian Yang, Diyan Li, Ye Zhao, Mingwang Zhang, Debing Li
Publicado 2021

Open-Source Sequence Clustering Methods Improve the State Of the Art

por Evguenia Kopylova, Jose A. Navas-Molina, Céline Mercier, Zhenjiang Zech Xu, Frédéric Mahé, Yan He, Hong-Wei Zhou, Torbjørn Rognes, J. Gregory Caporaso, Rob Knight
Publicado 2016

Marine Sediments Hold an Untapped Potential for Novel Taxonomic and Bioactive Bacterial Diversity

por Pernille Kjersgaard Bech, Klaus Lars Lysdal, Lone Gram, Mikkel Bentzon-Tilia, Mikael Lenz Strube
Publicado 2020

Evaluation of the Effect of Storage Methods on Fecal, Saliva, and Skin Microbiome Composition

por Clarisse Marotz, Kellen J. Cavagnero, Se Jin Song, Daniel McDonald, Stephen Wandro, Greg Humphrey, MacKenzie Bryant, Gail Ackermann, Edgar Diaz, Rob Knight
Publicado 2021

Contrasting Community Assembly Forces Drive Microbial Structural and Potential Functional Responses to Precipitation in an Incipient Soil System

por Aditi Sengupta, Aditi Sengupta, Till H. M. Volkmann, Robert E. Danczak, James C. Stegen, Katerina Dontsova, Nate Abramson, Aaron S. Bugaj, Michael J. Volk, Katarena A. Matos, Antonio A. Meira-Neto, Albert Barberán, Julia W. Neilson, Raina M. Maier, Jon Chorover, Peter A. Troch, Laura K. Meredith
Publicado 2021

Comparative Fungal Community Analyses Using Metatranscriptomics and Internal Transcribed Spacer Amplicon Sequencing from Norway Spruce

por Andreas N. Schneider, John Sundh, Görel Sundström, Kerstin Richau, Nicolas Delhomme, Manfred Grabherr, Vaughan Hurry, Nathaniel R. Street
Publicado 2021

Impact of Preservation Method and 16S rRNA Hypervariable Region on Gut Microbiota Profiling

por Zigui Chen, Pak Chun Hui, Mamie Hui, Yun Kit Yeoh, Po Yee Wong, Martin C. W. Chan, Martin C. S. Wong, Siew C. Ng, Francis K. L. Chan, Paul K. S. Chan
Publicado 2019

TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution

por Robin R. Rohwer, Joshua J. Hamilton, Ryan J. Newton, Katherine D. McMahon
Publicado 2018

Inconsistent Patterns of Microbial Diversity and Composition Between Highly Similar Sequencing Protocols: A Case Study With Reef-Building Corals

por Hannah E. Epstein, Alejandra Hernandez-Agreda, Samuel Starko, Julia K. Baum, Rebecca Vega Thurber
Publicado 2021

Archaeal and methanogenic communities in the rice field under different fertilizer applications

por Yuli Fatma, IMAN RUSMANA, ARIS TRI WAHYUDI, HAMIM
Publicado 2019

Microbial Surface Biofilm Responds to the Growth-Reproduction-Senescence Cycle of the Dominant Coral Reef Macroalgae <i>Sargassum</i> spp.

por Bettina Glasl, Jasmine B. Haskell, Tania Aires, Ester A. Serrão, David G. Bourne, Nicole S. Webster, Pedro R. Frade
Publicado 2021