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1“...) structures, Pfam domains, and protein–protein interaction interfaces. We show that somatic variants...”
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2“... within known protein structural domains (as defined in the Pfam database). Domain families with majority...”
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3“..., torsion angles and hydrogen bonds, and apply it to predict the structures of 1475 Pfam domains....”
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4“... and clusters the interfaces of pairs of full-length protein chains with defined Pfam domain architectures...”
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5“... been solved are discussed in detail. Finally, we identified from Pfam database datamining yeasts...”
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6“... of annotations deposited in various online resources such as KEGG, Gene Ontology and Pfam or any kind...”
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7“... algorithm to search against PfamA, KOG, COG, and SwissProt databases, and then launches PSI-BLAST against...”
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8por Sean R Eddy“... wide range of profile/sequence comparisons, using 9,318 profile-hidden Markov models from the Pfam...”
Publicado 2008
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9por Lopez,Jose V, Ledger,Angela, Santiago-Vázquez,Lory Z, Pop,Mihai, Sommer,Dan D, Ranzer,Llanie K, Feldman,Robert A, Russell,G. Kerr“... products, which yielded at least 53 orthologous groups of proteins (COGs) and Pfam clusters, including...”
Publicado 2011
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10“... overlap. The number of disordered binding regions and different Pfam domain types also contribute...”
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11“... (IMG) database, protein analysis at Pfam and literature research at PubMed. In the process, students...”
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12“... H37Rv are now identified in all mycobacterial species. The PE-PPE domain (Pfam ID: PF08237) is a 225...”
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13“... novo annotated for the presence of Pfam protein domains used as features to train and compare three ML...”
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14por Zhong-Jian Guo, Meng-Han Yu, Xian-Yun Dong, Wei-Li Wang, Ting Tian, Xian-Yin Yu, Xu-Dong Tang“... proteins and others, according to their predicted Pfam domain(s). Most viral proteins may not be essential...”
Publicado 2017
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15por Lukasz Jaroszewski, Zhanwen Li, S Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M Deacon, Ian A Wilson, Adam Godzik“... into families based on sequence similarity. The PFAM database currently contains over 2,200 such families...”
Publicado 2009
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16“... CPU-parallel MSAProbs. Additional tests performed on several protein families from Pfam database give...”
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18“... metacaspases. Pfam domain architecture analysis combined with operon identification revealed rich and varied...”
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19“... in archaea. A total of 2,786 bacterial Pfam domains even occur in animals, including 320 DUFs. Evolutionary...”
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20por Wellington Muchero, Mitchell M Sewell, Priya Ranjan, Lee E Gunter, Timothy J Tschaplinski, Tongming Yin, Gerald A Tuskan“... in genome-anchored QTL intervals, 1,892 had PFAM annotations. Of these, 1,313, representing 255 unique...”
Publicado 2013
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