Discovering differential genome sequence activity with interpretable and efficient deep learning.

por Jennifer Hammelman, David K Gifford
Publicado 2021

High resolution genome wide binding event finding and motif discovery reveals transcription factor spatial binding constraints.

por Yuchun Guo, Shaun Mahony, David K Gifford
Publicado 2012

Universal count correction for high-throughput sequencing.

por Tatsunori B Hashimoto, Matthew D Edwards, David K Gifford
Publicado 2014

Generative modeling of single-cell time series with PRESCIENT enables prediction of cell trajectories with interventions

por Grace Hui Ting Yeo, Sachit D. Saksena, David K. Gifford
Publicado 2021

Control of transcription by cell size.

por Chia-Yung Wu, P Alexander Rolfe, David K Gifford, Gerald R Fink
Publicado 2010

Machine learning based CRISPR gRNA design for therapeutic exon skipping.

por Wilson Louie, Max W Shen, Zakir Tahiry, Sophia Zhang, Daniel Worstell, Christopher A Cassa, Richard I Sherwood, David K Gifford
Publicado 2021

An integrated model of multiple-condition ChIP-Seq data reveals predeterminants of Cdx2 binding.

por Shaun Mahony, Matthew D Edwards, Esteban O Mazzoni, Richard I Sherwood, Akshay Kakumanu, Carolyn A Morrison, Hynek Wichterle, David K Gifford
Publicado 2014

Small molecule inhibition of ATM kinase increases CRISPR-Cas9 1-bp insertion frequency

por Heysol C. Bermudez-Cabrera, Sannie Culbertson, Sammy Barkal, Benjamin Holmes, Max W. Shen, Sophia Zhang, David K. Gifford, Richard I. Sherwood
Publicado 2021

Detection of gene cis-regulatory element perturbations in single-cell transcriptomes.

por Grace Hui Ting Yeo, Oscar Juez, Qing Chen, Budhaditya Banerjee, Lendy Chu, Max W Shen, May Sabry, Ive Logister, Richard I Sherwood, David K Gifford
Publicado 2021