Ten years of pathway analysis: current approaches and outstanding challenges.

por Purvesh Khatri, Marina Sirota, Atul J Butte
Publicado 2012

Correction: Corrigendum: Systematic pan-cancer analysis of tumour purity

por Dvir Aran, Marina Sirota, Atul J. Butte
Publicado 2016

A Haystack Heuristic for Autoimmune Disease Biomarker Discovery Using Next-Gen Immune Repertoire Sequencing Data

por Leonard Apeltsin, Shengzhi Wang, H.-Christian von Büdingen, Marina Sirota
Publicado 2017

Identifying a high fraction of the human genome to be under selective constraint using GERP++.

por Eugene V Davydov, David L Goode, Marina Sirota, Gregory M Cooper, Arend Sidow, Serafim Batzoglou
Publicado 2010

Characterizing pre-transplant and post-transplant kidney rejection risk by B cell immune repertoire sequencing

por Silvia Pineda, Tara K. Sigdel, Juliane M. Liberto, Flavio Vincenti, Marina Sirota, Minnie M. Sarwal
Publicado 2019

Reversal of cancer gene expression correlates with drug efficacy and reveals therapeutic targets

por Bin Chen, Li Ma, Hyojung Paik, Marina Sirota, Wei Wei, Mei-Sze Chua, Samuel So, Atul J. Butte
Publicado 2017

Comprehensive analysis of normal adjacent to tumor transcriptomes

por Dvir Aran, Roman Camarda, Justin Odegaard, Hyojung Paik, Boris Oskotsky, Gregor Krings, Andrei Goga, Marina Sirota, Atul J. Butte
Publicado 2017

Protected Health Information filter (Philter): accurately and securely de-identifying free-text clinical notes

por Beau Norgeot, Kathleen Muenzen, Thomas A. Peterson, Xuancheng Fan, Benjamin S. Glicksberg, Gundolf Schenk, Eugenia Rutenberg, Boris Oskotsky, Marina Sirota, Jinoos Yazdany, Gabriela Schmajuk, Dana Ludwig, Theodore Goldstein, Atul J. Butte
Publicado 2020

Transcriptomic analysis of immune cells in a multi-ethnic cohort of systemic lupus erythematosus patients identifies ethnicity- and disease-specific expression signatures

por Gaia Andreoletti, Cristina M. Lanata, Laura Trupin, Ishan Paranjpe, Tia S. Jain, Joanne Nititham, Kimberly E. Taylor, Alexis J. Combes, Lenka Maliskova, Chun Jimmie Ye, Patricia Katz, Maria Dall’Era, Jinoos Yazdany, Lindsey A. Criswell, Marina Sirota
Publicado 2021

Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19

por Brian L. Le, Gaia Andreoletti, Tomiko Oskotsky, Albert Vallejo-Gracia, Romel Rosales, Katharine Yu, Idit Kosti, Kristoffer E. Leon, Daniel G. Bunis, Christine Li, G. Renuka Kumar, Kris M. White, Adolfo García-Sastre, Melanie Ott, Marina Sirota
Publicado 2021

A phenotypic and genomics approach in a multi-ethnic cohort to subtype systemic lupus erythematosus

por Cristina M. Lanata, Ishan Paranjpe, Joanne Nititham, Kimberly E. Taylor, Milena Gianfrancesco, Manish Paranjpe, Shan Andrews, Sharon A. Chung, Brooke Rhead, Lisa F. Barcellos, Laura Trupin, Patricia Katz, Maria Dall’Era, Jinoos Yazdany, Marina Sirota, Lindsey A. Criswell
Publicado 2019

Author Correction: A phenotypic and genomics approach in a multi-ethnic cohort to subtype systemic lupus erythematosus

por Cristina M. Lanata, Ishan Paranjpe, Joanne Nititham, Kimberly E. Taylor, Milena Gianfrancesco, Manish Paranjpe, Shan Andrews, Sharon A. Chung, Brooke Rhead, Lisa F. Barcellos, Laura Trupin, Patricia Katz, Maria Dall’Era, Jinoos Yazdany, Marina Sirota, Lindsey A. Criswell
Publicado 2020

Germline-encoded neutralization of a Staphylococcus aureus virulence factor by the human antibody repertoire

por Yik Andy Yeung, Davide Foletti, Xiaodi Deng, Yasmina Abdiche, Pavel Strop, Jacob Glanville, Steven Pitts, Kevin Lindquist, Purnima D. Sundar, Marina Sirota, Adela Hasa-Moreno, Amber Pham, Jody Melton Witt, Irene Ni, Jaume Pons, David Shelton, Arvind Rajpal, Javier Chaparro-Riggers
Publicado 2016

A zebrafish screen reveals Renin-angiotensin system inhibitors as neuroprotective via mitochondrial restoration in dopamine neurons

por Gha-Hyun J Kim, Han Mo, Harrison Liu, Zhihao Wu, Steven Chen, Jiashun Zheng, Xiang Zhao, Daryl Nucum, James Shortland, Longping Peng, Mannuel Elepano, Benjamin Tang, Steven Olson, Nick Paras, Hao Li, Adam R Renslo, Michelle R Arkin, Bo Huang, Bingwei Lu, Marina Sirota, Su Guo
Publicado 2021

Tracheal aspirate RNA sequencing identifies distinct immunological features of COVID-19 ARDS

por Aartik Sarma, Stephanie A. Christenson, Ashley Byrne, Eran Mick, Angela Oliveira Pisco, Catherine DeVoe, Thomas Deiss, Rajani Ghale, Beth Shoshana Zha, Alexandra Tsitsiklis, Alejandra Jauregui, Farzad Moazed, Angela M. Detweiler, Natasha Spottiswoode, Pratik Sinha, Norma Neff, Michelle Tan, Paula Hayakawa Serpa, Andrew Willmore, K. Mark Ansel, Jennifer G. Wilson, Aleksandra Leligdowicz, Emily R. Siegel, Marina Sirota, Joseph L. DeRisi, Michael A. Matthay, COMET Consortium, Carolyn M. Hendrickson, Kirsten N. Kangelaris, Matthew F. Krummel, Prescott G. Woodruff, David J. Erle, Carolyn S. Calfee, Charles R. Langelier
Publicado 2021

Acute and Chronic Changes in Gene Expression After CMV DNAemia in Kidney Transplant Recipients

por Richard Ahn, Richard Ahn, Joanna Schaenman, Zachary Qian, Zachary Qian, Harry Pickering, Victoria Groysberg, Maura Rossetti, Megan Llamas, Alexander Hoffmann, Alexander Hoffmann, David Gjertson, David Gjertson, Mario Deng, Suphamai Bunnapradist, Elaine F. Reed, CMV Systems Immunobiology Group, Richard Ahn, Janice Arakawa-Hoyt, Patrick Boada, Jenny Brook, Suphamai Bunnapradist, Jim Cimino, Izabella Damm, Nakul Datta, Mario Deng, Don J. Diamond, Tin Doung, Janette Gadzhyan, David Elashoff, David Gjertson, Victoria Groysberg, Alexander Hoffmann, Kenichi Ishiyama, Maggie Kerwin, Lewis L. Lanier, Megan Llamas, Erik Lum, Dane Munar, Tariq Mukatash, Harry Pickering, Zachary Qian, Michelle Ramirez, Elaine F. Reed, Priyanka Rashmi, Rodney Rodgers, Dimitri Rychov, Minnie M. Sarwal, Joanna Schaenman, Subha Sen, Tara Sigdel, Danielle Sim, Marina Sirota, Swastika Sur, Otto Yang
Publicado 2021