Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer.

por Ali Bashir, Stanislav Volik, Colin Collins, Vineet Bafna, Benjamin J Raphael
Publicado 2008

Sample reproducibility of genetic association using different multimarker TDTs in genome-wide association studies: characterization and a new approach.

por Mara M Abad-Grau, Nuria Medina-Medina, Rosana Montes-Soldado, Fuencisla Matesanz, Vineet Bafna
Publicado 2012

Multiple mechanisms drive genomic adaptation to extreme O2 levels in Drosophila melanogaster

por Arya Iranmehr, Tsering Stobdan, Dan Zhou, Huiwen Zhao, Sergey Kryazhimskiy, Vineet Bafna, Gabriel G. Haddad
Publicado 2021

Exploring the landscape of focal amplifications in cancer using AmpliconArchitect

por Viraj Deshpande, Jens Luebeck, Nam-Phuong D. Nguyen, Mehrdad Bakhtiari, Kristen M. Turner, Richard Schwab, Hannah Carter, Paul S. Mischel, Vineet Bafna
Publicado 2019

Variable number tandem repeats mediate the expression of proximal genes

por Mehrdad Bakhtiari, Jonghun Park, Yuan-Chun Ding, Sharona Shleizer-Burko, Susan L. Neuhausen, Bjarni V. Halldórsson, Kári Stefánsson, Melissa Gymrek, Vineet Bafna
Publicado 2021

AmpliconReconstructor integrates NGS and optical mapping to resolve the complex structures of focal amplifications

por Jens Luebeck, Ceyda Coruh, Siavash R. Dehkordi, Joshua T. Lange, Kristen M. Turner, Viraj Deshpande, Dave A. Pai, Chao Zhang, Utkrisht Rajkumar, Julie A. Law, Paul S. Mischel, Vineet Bafna
Publicado 2020

Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells

por Tomoyuki Koga, Isaac A. Chaim, Jorge A. Benitez, Sebastian Markmiller, Alison D. Parisian, Robert F. Hevner, Kristen M. Turner, Florian M. Hessenauer, Matteo D’Antonio, Nam-phuong D. Nguyen, Shahram Saberi, Jianhui Ma, Shunichiro Miki, Antonia D. Boyer, John Ravits, Kelly A. Frazer, Vineet Bafna, Clark C. Chen, Paul S. Mischel, Gene W. Yeo, Frank B. Furnari
Publicado 2020

Author Correction: Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells

por Tomoyuki Koga, Isaac A. Chaim, Jorge A. Benitez, Sebastian Markmiller, Alison D. Parisian, Robert F. Hevner, Kristen M. Turner, Florian M. Hessenauer, Matteo D’Antonio, Nam-phuong D. Nguyen, Shahram Saberi, Jianhui Ma, Shunichiro Miki, Antonia D. Boyer, John Ravits, Kelly A. Frazer, Vineet Bafna, Clark C. Chen, Paul S. Mischel, Gene W. Yeo, Frank B. Furnari
Publicado 2020