High resolution models of transcription factor-DNA affinities improve in vitro and in vivo binding predictions.

por Phaedra Agius, Aaron Arvey, William Chang, William Stafford Noble, Christina Leslie
Publicado 2010

PREDICTD PaRallel Epigenomics Data Imputation with Cloud-based Tensor Decomposition

por Timothy J. Durham, Maxwell W. Libbrecht, J. Jeffry Howbert, Jeff Bilmes, William Stafford Noble
Publicado 2018

Dynamics of genome reorganization during human cardiogenesis reveal an RBM20-dependent splicing factory

por Alessandro Bertero, Paul A. Fields, Vijay Ramani, Giancarlo Bonora, Galip G. Yardimci, Hans Reinecke, Lil Pabon, William S. Noble, Jay Shendure, Charles E. Murry
Publicado 2019

Local chromatin fiber folding represses transcription and loop extrusion in quiescent cells

por Sarah G Swygert, Dejun Lin, Stephanie Portillo-Ledesma, Po-Yen Lin, Dakota R Hunt, Cheng-Fu Kao, Tamar Schlick, William S Noble, Toshio Tsukiyama
Publicado 2021

Capturing cell type-specific chromatin compartment patterns by applying topic modeling to single-cell Hi-C data.

por Hyeon-Jin Kim, Galip Gürkan Yardımcı, Giancarlo Bonora, Vijay Ramani, Jie Liu, Ruolan Qiu, Choli Lee, Jennifer Hesson, Carol B Ware, Jay Shendure, Zhijun Duan, William Stafford Noble
Publicado 2020

Trans- and cis-acting effects of Firre on epigenetic features of the inactive X chromosome

por He Fang, Giancarlo Bonora, Jordan P. Lewandowski, Jitendra Thakur, Galina N. Filippova, Steven Henikoff, Jay Shendure, Zhijun Duan, John L. Rinn, Xinxian Deng, William S. Noble, Christine M. Disteche
Publicado 2020

Comprehensive statistical inference of the clonal structure of cancer from multiple biopsies

por Jie Liu, John T. Halloran, Jeffrey A. Bilmes, Riza M. Daza, Choli Lee, Elisabeth M. Mahen, Donna Prunkard, Chaozhong Song, Sibel Blau, Michael O. Dorschner, Vijayakrishna K. Gadi, Jay Shendure, C. Anthony Blau, William S. Noble
Publicado 2017

Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages

por Evelien M. Bunnik, Kate B. Cook, Nelle Varoquaux, Gayani Batugedara, Jacques Prudhomme, Anthony Cort, Lirong Shi, Chiara Andolina, Leila S. Ross, Declan Brady, David A. Fidock, Francois Nosten, Rita Tewari, Photini Sinnis, Ferhat Ay, Jean-Philippe Vert, William Stafford Noble, Karine G. Le Roch
Publicado 2018