Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei

Whole genome sequencing is increasingly being adopted for Shigella sonnei outbreak investigation and surveillance, but there is no global classification standard. Here, the authors develop and validate a genomic framework implemented using open-source software, and demonstrate its application using...

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Autores principales:	Jane Hawkey, Kalani Paranagama, Kate S. Baker, Rebecca J. Bengtsson, François-Xavier Weill, Nicholas R. Thomson, Stephen Baker, Louise Cerdeira, Zamin Iqbal, Martin Hunt, Danielle J. Ingle, Timothy J. Dallman, Claire Jenkins, Deborah A. Williamson, Kathryn E. Holt
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2021
Materias:	Science Q
Acceso en línea:	https://doaj.org/article/791a5cd8e43b46bfb08ed6884c5a3269
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spelling	oai:doaj.org-article:791a5cd8e43b46bfb08ed6884c5a32692021-12-02T15:36:11ZGlobal population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei10.1038/s41467-021-22700-42041-1723https://doaj.org/article/791a5cd8e43b46bfb08ed6884c5a32692021-05-01T00:00:00Zhttps://doi.org/10.1038/s41467-021-22700-4https://doaj.org/toc/2041-1723Whole genome sequencing is increasingly being adopted for Shigella sonnei outbreak investigation and surveillance, but there is no global classification standard. Here, the authors develop and validate a genomic framework implemented using open-source software, and demonstrate its application using surveillance data.Jane HawkeyKalani ParanagamaKate S. BakerRebecca J. BengtssonFrançois-Xavier WeillNicholas R. ThomsonStephen BakerLouise CerdeiraZamin IqbalMartin HuntDanielle J. IngleTimothy J. DallmanClaire JenkinsDeborah A. WilliamsonKathryn E. HoltNature PortfolioarticleScienceQENNature Communications, Vol 12, Iss 1, Pp 1-12 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q Jane Hawkey Kalani Paranagama Kate S. Baker Rebecca J. Bengtsson François-Xavier Weill Nicholas R. Thomson Stephen Baker Louise Cerdeira Zamin Iqbal Martin Hunt Danielle J. Ingle Timothy J. Dallman Claire Jenkins Deborah A. Williamson Kathryn E. Holt Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei
description	Whole genome sequencing is increasingly being adopted for Shigella sonnei outbreak investigation and surveillance, but there is no global classification standard. Here, the authors develop and validate a genomic framework implemented using open-source software, and demonstrate its application using surveillance data.
format	article
author	Jane Hawkey Kalani Paranagama Kate S. Baker Rebecca J. Bengtsson François-Xavier Weill Nicholas R. Thomson Stephen Baker Louise Cerdeira Zamin Iqbal Martin Hunt Danielle J. Ingle Timothy J. Dallman Claire Jenkins Deborah A. Williamson Kathryn E. Holt
author_facet	Jane Hawkey Kalani Paranagama Kate S. Baker Rebecca J. Bengtsson François-Xavier Weill Nicholas R. Thomson Stephen Baker Louise Cerdeira Zamin Iqbal Martin Hunt Danielle J. Ingle Timothy J. Dallman Claire Jenkins Deborah A. Williamson Kathryn E. Holt
author_sort	Jane Hawkey
title	Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei
title_short	Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei
title_full	Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei
title_fullStr	Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei
title_full_unstemmed	Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei
title_sort	global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, shigella sonnei
publisher	Nature Portfolio
publishDate	2021
url	https://doaj.org/article/791a5cd8e43b46bfb08ed6884c5a3269
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Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei

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