A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatch

Whole genome sequencing data are increasingly becoming routinely available but generating actionable insights is challenging. Here, the authors describe Pathogenwatch, a web tool for genomic surveillance of S. Typhi, and demonstrate its use for antimicrobial resistance assignment and strain risk ass...

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Autores principales:	Silvia Argimón, Corin A. Yeats, Richard J. Goater, Khalil Abudahab, Benjamin Taylor, Anthony Underwood, Leonor Sánchez-Busó, Vanessa K. Wong, Zoe A. Dyson, Satheesh Nair, Se Eun Park, Florian Marks, Andrew J. Page, Jacqueline A. Keane, Stephen Baker, Kathryn E. Holt, Gordon Dougan, David M. Aanensen
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2021
Materias:	Science Q
Acceso en línea:	https://doaj.org/article/8067dd1bb7af437ca15c3973913ab4f9
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spelling	oai:doaj.org-article:8067dd1bb7af437ca15c3973913ab4f92021-12-02T15:52:52ZA global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatch10.1038/s41467-021-23091-22041-1723https://doaj.org/article/8067dd1bb7af437ca15c3973913ab4f92021-05-01T00:00:00Zhttps://doi.org/10.1038/s41467-021-23091-2https://doaj.org/toc/2041-1723Whole genome sequencing data are increasingly becoming routinely available but generating actionable insights is challenging. Here, the authors describe Pathogenwatch, a web tool for genomic surveillance of S. Typhi, and demonstrate its use for antimicrobial resistance assignment and strain risk assessment.Silvia ArgimónCorin A. YeatsRichard J. GoaterKhalil AbudahabBenjamin TaylorAnthony UnderwoodLeonor Sánchez-BusóVanessa K. WongZoe A. DysonSatheesh NairSe Eun ParkFlorian MarksAndrew J. PageJacqueline A. KeaneStephen BakerKathryn E. HoltGordon DouganDavid M. AanensenNature PortfolioarticleScienceQENNature Communications, Vol 12, Iss 1, Pp 1-12 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q Silvia Argimón Corin A. Yeats Richard J. Goater Khalil Abudahab Benjamin Taylor Anthony Underwood Leonor Sánchez-Busó Vanessa K. Wong Zoe A. Dyson Satheesh Nair Se Eun Park Florian Marks Andrew J. Page Jacqueline A. Keane Stephen Baker Kathryn E. Holt Gordon Dougan David M. Aanensen A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatch
description	Whole genome sequencing data are increasingly becoming routinely available but generating actionable insights is challenging. Here, the authors describe Pathogenwatch, a web tool for genomic surveillance of S. Typhi, and demonstrate its use for antimicrobial resistance assignment and strain risk assessment.
format	article
author	Silvia Argimón Corin A. Yeats Richard J. Goater Khalil Abudahab Benjamin Taylor Anthony Underwood Leonor Sánchez-Busó Vanessa K. Wong Zoe A. Dyson Satheesh Nair Se Eun Park Florian Marks Andrew J. Page Jacqueline A. Keane Stephen Baker Kathryn E. Holt Gordon Dougan David M. Aanensen
author_facet	Silvia Argimón Corin A. Yeats Richard J. Goater Khalil Abudahab Benjamin Taylor Anthony Underwood Leonor Sánchez-Busó Vanessa K. Wong Zoe A. Dyson Satheesh Nair Se Eun Park Florian Marks Andrew J. Page Jacqueline A. Keane Stephen Baker Kathryn E. Holt Gordon Dougan David M. Aanensen
author_sort	Silvia Argimón
title	A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatch
title_short	A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatch
title_full	A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatch
title_fullStr	A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatch
title_full_unstemmed	A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatch
title_sort	global resource for genomic predictions of antimicrobial resistance and surveillance of salmonella typhi at pathogenwatch
publisher	Nature Portfolio
publishDate	2021
url	https://doaj.org/article/8067dd1bb7af437ca15c3973913ab4f9
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A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatch

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