Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping

por Amnon Amir, Daniel McDonald, Jose A. Navas-Molina, Justine Debelius, James T. Morton, Embriette Hyde, Adam Robbins-Pianka, Rob Knight
Publicado 2017

Comparative Analysis of Root Microbiomes of Rice Cultivars with High and Low Methane Emissions Reveals Differences in Abundance of Methanogenic Archaea and Putative Upstream Fermen...

por Zachary Liechty, Christian Santos-Medellín, Joseph Edwards, Bao Nguyen, David Mikhail, Shane Eason, Gregory Phillips, Venkatesan Sundaresan
Publicado 2020

Progressive Microbial Community Networks with Incremental Organic Loading Rates Underlie Higher Anaerobic Digestion Performance

por Linwei Wu, Xiaoyu Shan, Si Chen, Qiuting Zhang, Qi Qi, Ziyan Qin, Huaqun Yin, Jizhong Zhou, Qiang He, Yunfeng Yang
Publicado 2020

Adaptation of <named-content content-type="genus-species">Escherichia coli</named-content> to Long-Term Serial Passage in Complex Medium: Evidence of Parallel Evolution

por Karin E. Kram, Christopher Geiger, Wazim Mohammed Ismail, Heewook Lee, Haixu Tang, Patricia L. Foster, Steven E. Finkel
Publicado 2017

Listeriomics: an Interactive Web Platform for Systems Biology of <italic toggle="yes">Listeria</italic>

por Christophe Bécavin, Mikael Koutero, Nicolas Tchitchek, Franck Cerutti, Pierre Lechat, Nicolas Maillet, Claire Hoede, Hélène Chiapello, Christine Gaspin, Pascale Cossart
Publicado 2017

Understanding Human-Virus Protein-Protein Interactions Using a Human Protein Complex-Based Analysis Framework

por Shiping Yang, Chen Fu, Xianyi Lian, Xiaobao Dong, Ziding Zhang
Publicado 2019

Intermittent Hypoxia and Hypercapnia Reproducibly Change the Gut Microbiome and Metabolome across Rodent Model Systems

por Anupriya Tripathi, Zhenjiang Zech Xu, Jin Xue, Orit Poulsen, Antonio Gonzalez, Gregory Humphrey, Michael J. Meehan, Alexey V. Melnik, Gail Ackermann, Dan Zhou, Atul Malhotra, Gabriel G. Haddad, Pieter C. Dorrestein, Rob Knight
Publicado 2019

Linking Spatial Structure and Community-Level Biotic Interactions through Cooccurrence and Time Series Modeling of the Human Intestinal Microbiota

por Eric J. de Muinck, Knut E. A. Lundin, Pål Trosvik
Publicado 2017

Genomic Variations Underlying Speciation and Niche Specialization of <italic toggle="yes">Shewanella baltica</italic>

por Jie Deng, Jennifer M. Auchtung, Konstantinos T. Konstantinidis, Ingrid Brettar, Manfred G. Höfle, James M. Tiedje
Publicado 2019

Contrasting Pathways for Anaerobic Methane Oxidation in Gulf of Mexico Cold Seep Sediments

por Adrien Vigneron, Eric B. Alsop, Perrine Cruaud, Gwenaelle Philibert, Benjamin King, Leslie Baksmaty, David Lavallee, Bartholomeus P. Lomans, Emiley Eloe-Fadrosh, Nikos C. Kyrpides, Ian M. Head, Nicolas Tsesmetzis
Publicado 2019

Beneficial Chromosomal Integration of the Genes for CTX-M Extended-Spectrum β-Lactamase in <italic toggle="yes">Klebsiella pneumoniae</italic> for Stable Propagation

por Eun-Jeong Yoon, Bareum Gwon, Changseung Liu, Dokyun Kim, Dongju Won, Sung Gyun Park, Jong Rak Choi, Seok Hoon Jeong
Publicado 2020

SARS-CoV-2 Titers in Wastewater Are Higher than Expected from Clinically Confirmed Cases

por Fuqing Wu, Jianbo Zhang, Amy Xiao, Xiaoqiong Gu, Wei Lin Lee, Federica Armas, Kathryn Kauffman, William Hanage, Mariana Matus, Newsha Ghaeli, Noriko Endo, Claire Duvallet, Mathilde Poyet, Katya Moniz, Alex D. Washburne, Timothy B. Erickson, Peter R. Chai, Janelle Thompson, Eric J. Alm
Publicado 2020

Insights into Butyrate Production in a Controlled Fermentation System via Gene Predictions

por S. Esquivel-Elizondo, Z. E. Ilhan, E. I. Garcia-Peña, R. Krajmalnik-Brown
Publicado 2017

Fecal Microbiota Transplantation in Gestating Sows and Neonatal Offspring Alters Lifetime Intestinal Microbiota and Growth in Offspring

por Ursula M. McCormack, Tânia Curião, Toby Wilkinson, Barbara U. Metzler-Zebeli, Henry Reyer, Tomas Ryan, Julia A. Calderon-Diaz, Fiona Crispie, Paul D. Cotter, Christopher J. Creevey, Gillian E. Gardiner, Peadar G. Lawlor
Publicado 2018

Altered Distribution of RNA Polymerase Lacking the Omega Subunit within the Prophages along the <named-content content-type="genus-species">Escherichia coli</named-content> K-12 Ge...

por Kaneyoshi Yamamoto, Yuki Yamanaka, Tomohiro Shimada, Paramita Sarkar, Myu Yoshida, Neerupma Bhardwaj, Hiroki Watanabe, Yuki Taira, Dipankar Chatterji, Akira Ishihama
Publicado 2018

Subspecies Niche Specialization in the Oral Microbiome Is Associated with Nasopharyngeal Carcinoma Risk

por Justine W. Debelius, Tingting Huang, Yonglin Cai, Alexander Ploner, Donal Barrett, Xiaoying Zhou, Xue Xiao, Yancheng Li, Jian Liao, Yuming Zheng, Guangwu Huang, Hans-Olov Adami, Yi Zeng, Zhe Zhang, Weimin Ye
Publicado 2020

Coordinated Hibernation of Transcriptional and Translational Apparatus during Growth Transition of <named-content content-type="genus-species">Escherichia coli</named-content> to S...

por Hideji Yoshida, Tomohiro Shimada, Akira Ishihama
Publicado 2018

Metabolic Modeling of Cystic Fibrosis Airway Communities Predicts Mechanisms of Pathogen Dominance

por Michael A. Henson, Giulia Orazi, Poonam Phalak, George A. O’Toole
Publicado 2019

Handwashing and Detergent Treatment Greatly Reduce SARS-CoV-2 Viral Load on Halloween Candy Handled by COVID-19 Patients

por Rodolfo A. Salido, Sydney C. Morgan, Maria I. Rojas, Celestine G. Magallanes, Clarisse Marotz, Peter DeHoff, Pedro Belda-Ferre, Stefan Aigner, Deborah M. Kado, Gene W. Yeo, Jack A. Gilbert, Louise Laurent, Forest Rohwer, Rob Knight
Publicado 2020

Correction for Estaki et al., “Physical Activity Shapes the Intestinal Microbiome and Immunity of Healthy Mice but Has No Protective Effects against Colitis in MUC2^−/− M...

por Mehrbod Estaki, Douglas W. Morck, Sanjoy Ghosh, Candice Quin, Jason Pither, Jacqueline A. Barnett, Sandeep K. Gill, Deanna L. Gibson
Publicado 2020