Atypical Divergence of SARS-CoV-2 Orf8 from Orf7a within the Coronavirus Lineage Suggests Potential Stealthy Viral Strategies in Immune Evasion

por Russell Y. Neches, Nikos C. Kyrpides, Christos A. Ouzounis
Publicado 2021

RNA-Dependent Cysteine Biosynthesis in Bacteria and Archaea

por Takahito Mukai, Ana Crnković, Takuya Umehara, Natalia N. Ivanova, Nikos C. Kyrpides, Dieter Söll
Publicado 2017

A thermostable Cas9 with increased lifetime in human plasma

por Lucas B. Harrington, David Paez-Espino, Brett T. Staahl, Janice S. Chen, Enbo Ma, Nikos C. Kyrpides, Jennifer A. Doudna
Publicado 2017

Improving microbial genome annotations in an integrated database context.

por I-Min A Chen, Victor M Markowitz, Ken Chu, Iain Anderson, Konstantinos Mavromatis, Nikos C Kyrpides, Natalia N Ivanova
Publicado 2013

Comparative metagenomic and metatranscriptomic analysis of hindgut paunch microbiota in wood- and dung-feeding higher termites.

por Shaomei He, Natalia Ivanova, Edward Kirton, Martin Allgaier, Claudia Bergin, Rudolf H Scheffrahn, Nikos C Kyrpides, Falk Warnecke, Susannah G Tringe, Philip Hugenholtz
Publicado 2013

Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii.

por Konstantinos Mavromatis, Natalia Ivanova, Iain Anderson, Athanasios Lykidis, Sean D Hooper, Hui Sun, Victor Kunin, Alla Lapidus, Philip Hugenholtz, Bharat Patel, Nikos C Kyrpides
Publicado 2009

The complete multipartite genome sequence of Cupriavidus necator JMP134, a versatile pollutant degrader.

por Athanasios Lykidis, Danilo Pérez-Pantoja, Thomas Ledger, Kostantinos Mavromatis, Iain J Anderson, Natalia N Ivanova, Sean D Hooper, Alla Lapidus, Susan Lucas, Bernardo González, Nikos C Kyrpides
Publicado 2010

Contrasting Pathways for Anaerobic Methane Oxidation in Gulf of Mexico Cold Seep Sediments

por Adrien Vigneron, Eric B. Alsop, Perrine Cruaud, Gwenaelle Philibert, Benjamin King, Leslie Baksmaty, David Lavallee, Bartholomeus P. Lomans, Emiley Eloe-Fadrosh, Nikos C. Kyrpides, Ian M. Head, Nicolas Tsesmetzis
Publicado 2019

The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annotation.

por Konstantinos Mavromatis, Miriam L Land, Thomas S Brettin, Daniel J Quest, Alex Copeland, Alicia Clum, Lynne Goodwin, Tanja Woyke, Alla Lapidus, Hans Peter Klenk, Robert W Cottingham, Nikos C Kyrpides
Publicado 2012

IMG/M-HMP: a metagenome comparative analysis system for the Human Microbiome Project.

por Victor M Markowitz, I-Min A Chen, Ken Chu, Ernest Szeto, Krishna Palaniappan, Biju Jacob, Anna Ratner, Konstantinos Liolios, Ioanna Pagani, Marcel Huntemann, Konstantinos Mavromatis, Natalia N Ivanova, Nikos C Kyrpides
Publicado 2012

IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites

por Michalis Hadjithomas, I-Min Amy Chen, Ken Chu, Anna Ratner, Krishna Palaniappan, Ernest Szeto, Jinghua Huang, T. B. K. Reddy, Peter Cimermančič, Michael A. Fischbach, Natalia N. Ivanova, Victor M. Markowitz, Nikos C. Kyrpides, Amrita Pati
Publicado 2015

DOE JGI Metagenome Workflow

por Alicia Clum, Marcel Huntemann, Brian Bushnell, Brian Foster, Bryce Foster, Simon Roux, Patrick P. Hajek, Neha Varghese, Supratim Mukherjee, T. B. K. Reddy, Chris Daum, Yuko Yoshinaga, Ronan O’Malley, Rekha Seshadri, Nikos C. Kyrpides, Emiley A. Eloe-Fadrosh, I-Min A. Chen, Alex Copeland, Natalia N. Ivanova
Publicado 2021

On the Origin of Reverse Transcriptase-Using CRISPR-Cas Systems and Their Hyperdiverse, Enigmatic Spacer Repertoires

por Sukrit Silas, Kira S. Makarova, Sergey Shmakov, David Páez-Espino, Georg Mohr, Yi Liu, Michelle Davison, Simon Roux, Siddharth R. Krishnamurthy, Becky Xu Hua Fu, Loren L. Hansen, David Wang, Matthew B. Sullivan, Andrew Millard, Martha R. Clokie, Devaki Bhaya, Alan M. Lambowitz, Nikos C. Kyrpides, Eugene V. Koonin, Andrew Z. Fire
Publicado 2017

The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri.

por Steven A Frese, Andrew K Benson, Gerald W Tannock, Diane M Loach, Jaehyoung Kim, Min Zhang, Phaik Lyn Oh, Nicholas C K Heng, Prabhu B Patil, Nathalie Juge, Donald A Mackenzie, Bruce M Pearson, Alla Lapidus, Eileen Dalin, Hope Tice, Eugene Goltsman, Miriam Land, Loren Hauser, Natalia Ivanova, Nikos C Kyrpides, Jens Walter
Publicado 2011

Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs

por Emiley A. Eloe-Fadrosh, David Paez-Espino, Jessica Jarett, Peter F. Dunfield, Brian P. Hedlund, Anne E. Dekas, Stephen E. Grasby, Allyson L. Brady, Hailiang Dong, Brandon R. Briggs, Wen-Jun Li, Danielle Goudeau, Rex Malmstrom, Amrita Pati, Jennifer Pett-Ridge, Edward M. Rubin, Tanja Woyke, Nikos C. Kyrpides, Natalia N. Ivanova
Publicado 2016

The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole

por Kara Martin, Katrin Schmidt, Andrew Toseland, Chris A. Boulton, Kerrie Barry, Bánk Beszteri, Corina P. D. Brussaard, Alicia Clum, Chris G. Daum, Emiley Eloe-Fadrosh, Allison Fong, Brian Foster, Bryce Foster, Michael Ginzburg, Marcel Huntemann, Natalia N. Ivanova, Nikos C. Kyrpides, Erika Lindquist, Supratim Mukherjee, Krishnaveni Palaniappan, T. B. K. Reddy, Mariam R. Rizkallah, Simon Roux, Klaas Timmermans, Susannah G. Tringe, Willem H. van de Poll, Neha Varghese, Klaus U. Valentin, Timothy M. Lenton, Igor V. Grigoriev, Richard M. Leggett, Vincent Moulton, Thomas Mock
Publicado 2021

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains.

por Nikos C Kyrpides, Philip Hugenholtz, Jonathan A Eisen, Tanja Woyke, Markus Göker, Charles T Parker, Rudolf Amann, Brian J Beck, Patrick S G Chain, Jongsik Chun, Rita R Colwell, Antoine Danchin, Peter Dawyndt, Tom Dedeurwaerdere, Edward F DeLong, John C Detter, Paul De Vos, Timothy J Donohue, Xiu-Zhu Dong, Dusko S Ehrlich, Claire Fraser, Richard Gibbs, Jack Gilbert, Paul Gilna, Frank Oliver Glöckner, Janet K Jansson, Jay D Keasling, Rob Knight, David Labeda, Alla Lapidus, Jung-Sook Lee, Wen-Jun Li, Juncai Ma, Victor Markowitz, Edward R B Moore, Mark Morrison, Folker Meyer, Karen E Nelson, Moriya Ohkuma, Christos A Ouzounis, Norman Pace, Julian Parkhill, Nan Qin, Ramon Rossello-Mora, Johannes Sikorski, David Smith, Mitch Sogin, Rick Stevens, Uli Stingl, Ken-Ichiro Suzuki, Dorothea Taylor, Jim M Tiedje, Brian Tindall, Michael Wagner, George Weinstock, Jean Weissenbach, Owen White, Jun Wang, Lixin Zhang, Yu-Guang Zhou, Dawn Field, William B Whitman, George M Garrity, Hans-Peter Klenk
Publicado 2014