Dielectrophoresis-based discrimination of bacteria at the strain level based on their surface properties.

por William A Braff, Dana Willner, Philip Hugenholtz, Korneel Rabaey, Cullen R Buie
Publicado 2013

Shining a light on dark sequencing: characterising errors in Ion Torrent PGM data.

por Lauren M Bragg, Glenn Stone, Margaret K Butler, Philip Hugenholtz, Gene W Tyson
Publicado 2013

Contrasting Life Strategies of Viruses that Infect Photo- and Heterotrophic Bacteria, as Revealed by Viral Tagging

por Li Deng, Ann Gregory, Suzan Yilmaz, Bonnie T. Poulos, Philip Hugenholtz, Matthew B. Sullivan
Publicado 2012

Contrasting Life Strategies of Viruses That Infect Photo- and Heterotrophic Bacteria, as Revealed by Viral Tagging

por Li Deng, Ann Gregory, Suzan Yilmaz, Bonnie T. Poulos, Philip Hugenholtz, Matthew B. Sullivan
Publicado 2013

Comparison of DNA extraction methods for microbial community profiling with an application to pediatric bronchoalveolar lavage samples.

por Dana Willner, Joshua Daly, David Whiley, Keith Grimwood, Claire E Wainwright, Philip Hugenholtz
Publicado 2012

Single Clinical Isolates from Acute Uncomplicated Urinary Tract Infections Are Representative of Dominant <italic toggle="yes">In Situ</italic> Populations

por Dana Willner, Serene Low, Jason A. Steen, Narelle George, Graeme R. Nimmo, Mark A. Schembri, Philip Hugenholtz
Publicado 2014

Evolutionary relationships of wild hominids recapitulated by gut microbial communities.

por Howard Ochman, Michael Worobey, Chih-Horng Kuo, Jean-Bosco N Ndjango, Martine Peeters, Beatrice H Hahn, Philip Hugenholtz
Publicado 2010

Evolutionary conservation of a core root microbiome across plant phyla along a tropical soil chronosequence

por Yun Kit Yeoh, Paul G. Dennis, Chanyarat Paungfoo-Lonhienne, Lui Weber, Richard Brackin, Mark A. Ragan, Susanne Schmidt, Philip Hugenholtz
Publicado 2017

Phage encoded H-NS: a potential achilles heel in the bacterial defence system.

por Connor T Skennerton, Florent E Angly, Mya Breitbart, Lauren Bragg, Shaomei He, Katherine D McMahon, Philip Hugenholtz, Gene W Tyson
Publicado 2011

Do You Kiss Your Mother with That Mouth? An Authentic Large-Scale Undergraduate Research Experience in Mapping the Human Oral Microbiome

por Jack T. H. Wang, Joshua N. Daly, Dana L. Willner, Jayee Patil, Roy A. Hall, Mark A. Schembri, Gene W. Tyson, Philip Hugenholtz
Publicado 2015

Comparative metagenomic and metatranscriptomic analysis of hindgut paunch microbiota in wood- and dung-feeding higher termites.

por Shaomei He, Natalia Ivanova, Edward Kirton, Martin Allgaier, Claudia Bergin, Rudolf H Scheffrahn, Nikos C Kyrpides, Falk Warnecke, Susannah G Tringe, Philip Hugenholtz
Publicado 2013

Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii.

por Konstantinos Mavromatis, Natalia Ivanova, Iain Anderson, Athanasios Lykidis, Sean D Hooper, Hui Sun, Victor Kunin, Alla Lapidus, Philip Hugenholtz, Bharat Patel, Nikos C Kyrpides
Publicado 2009

Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community.

por Martin Allgaier, Amitha Reddy, Joshua I Park, Natalia Ivanova, Patrik D'haeseleer, Steve Lowry, Rajat Sapra, Terry C Hazen, Blake A Simmons, Jean S VanderGheynst, Philip Hugenholtz
Publicado 2010

A Natural History of Actinic Keratosis and Cutaneous Squamous Cell Carcinoma Microbiomes

por David L. A. Wood, Nancy Lachner, Jean-Marie Tan, Stephanie Tang, Nicola Angel, Antonia Laino, Richard Linedale, Kim-Anh Lê Cao, Mark Morrison, Ian H. Frazer, H. Peter Soyer, Philip Hugenholtz
Publicado 2018

Proteogenomic analysis of a thermophilic bacterial consortium adapted to deconstruct switchgrass.

por Patrik D'haeseleer, John M Gladden, Martin Allgaier, Patrik S G Chain, Susannah G Tringe, Stephanie A Malfatti, Joshua T Aldrich, Carrie D Nicora, Errol W Robinson, Ljiljana Paša-Tolić, Philip Hugenholtz, Blake A Simmons, Steven W Singer
Publicado 2013

Disease-associated gut microbiome and metabolome changes in patients with chronic obstructive pulmonary disease

por Kate L. Bowerman, Saima Firdous Rehman, Annalicia Vaughan, Nancy Lachner, Kurtis F. Budden, Richard Y. Kim, David L. A. Wood, Shaan L. Gellatly, Shakti D. Shukla, Lisa G. Wood, Ian A. Yang, Peter A. Wark, Philip Hugenholtz, Philip M. Hansbro
Publicado 2020

American Gut: an Open Platform for Citizen Science Microbiome Research

por Daniel McDonald, Embriette Hyde, Justine W. Debelius, James T. Morton, Antonio Gonzalez, Gail Ackermann, Alexander A. Aksenov, Bahar Behsaz, Caitriona Brennan, Yingfeng Chen, Lindsay DeRight Goldasich, Pieter C. Dorrestein, Robert R. Dunn, Ashkaan K. Fahimipour, James Gaffney, Jack A. Gilbert, Grant Gogul, Jessica L. Green, Philip Hugenholtz, Greg Humphrey, Curtis Huttenhower, Matthew A. Jackson, Stefan Janssen, Dilip V. Jeste, Lingjing Jiang, Scott T. Kelley, Dan Knights, Tomasz Kosciolek, Joshua Ladau, Jeff Leach, Clarisse Marotz, Dmitry Meleshko, Alexey V. Melnik, Jessica L. Metcalf, Hosein Mohimani, Emmanuel Montassier, Jose Navas-Molina, Tanya T. Nguyen, Shyamal Peddada, Pavel Pevzner, Katherine S. Pollard, Gholamali Rahnavard, Adam Robbins-Pianka, Naseer Sangwan, Joshua Shorenstein, Larry Smarr, Se Jin Song, Timothy Spector, Austin D. Swafford, Varykina G. Thackray, Luke R. Thompson, Anupriya Tripathi, Yoshiki Vázquez-Baeza, Alison Vrbanac, Paul Wischmeyer, Elaine Wolfe, Qiyun Zhu, Rob Knight
Publicado 2018

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains.

por Nikos C Kyrpides, Philip Hugenholtz, Jonathan A Eisen, Tanja Woyke, Markus Göker, Charles T Parker, Rudolf Amann, Brian J Beck, Patrick S G Chain, Jongsik Chun, Rita R Colwell, Antoine Danchin, Peter Dawyndt, Tom Dedeurwaerdere, Edward F DeLong, John C Detter, Paul De Vos, Timothy J Donohue, Xiu-Zhu Dong, Dusko S Ehrlich, Claire Fraser, Richard Gibbs, Jack Gilbert, Paul Gilna, Frank Oliver Glöckner, Janet K Jansson, Jay D Keasling, Rob Knight, David Labeda, Alla Lapidus, Jung-Sook Lee, Wen-Jun Li, Juncai Ma, Victor Markowitz, Edward R B Moore, Mark Morrison, Folker Meyer, Karen E Nelson, Moriya Ohkuma, Christos A Ouzounis, Norman Pace, Julian Parkhill, Nan Qin, Ramon Rossello-Mora, Johannes Sikorski, David Smith, Mitch Sogin, Rick Stevens, Uli Stingl, Ken-Ichiro Suzuki, Dorothea Taylor, Jim M Tiedje, Brian Tindall, Michael Wagner, George Weinstock, Jean Weissenbach, Owen White, Jun Wang, Lixin Zhang, Yu-Guang Zhou, Dawn Field, William B Whitman, George M Garrity, Hans-Peter Klenk
Publicado 2014