Viral evolution in the genomic age.

por Edward C Holmes
Publicado 2007

Can Sequence Phylogenies Safely Infer the Origin of the Global Virome?

por Edward C. Holmes, Sebastián Duchêne
Publicado 2019

Metagenomic Identification of Viral Sequences in Laboratory Reagents

por Ashleigh F. Porter, Joanna Cobbin, Ci-Xiu Li, John-Sebastian Eden, Edward C. Holmes
Publicado 2021

Parasite Microbiome Project: Systematic Investigation of Microbiome Dynamics within and across Parasite-Host Interactions

por Nolwenn M. Dheilly, Daniel Bolnick, Seth Bordenstein, Paul J. Brindley, Cédric Figuères, Edward C. Holmes, Joaquín Martínez Martínez, Anna J. Phillips, Robert Poulin, Karyna Rosario
Publicado 2017

Intrahost Dynamics of Antiviral Resistance in Influenza A Virus Reflect Complex Patterns of Segment Linkage, Reassortment, and Natural Selection

por Matthew B. Rogers, Timothy Song, Robert Sebra, Benjamin D. Greenbaum, Marie-Eve Hamelin, Adam Fitch, Alan Twaddle, Lijia Cui, Edward C. Holmes, Guy Boivin, Elodie Ghedin
Publicado 2015

Evolutionary history and attenuation of myxoma virus on two continents.

por Peter J Kerr, Elodie Ghedin, Jay V DePasse, Adam Fitch, Isabella M Cattadori, Peter J Hudson, David C Tscharke, Andrew F Read, Edward C Holmes
Publicado 2012

Endemic dengue associated with the co-circulation of multiple viral lineages and localized density-dependent transmission.

por Jayna Raghwani, Andrew Rambaut, Edward C Holmes, Vu Ty Hang, Tran Tinh Hien, Jeremy Farrar, Bridget Wills, Niall J Lennon, Bruce W Birren, Matthew R Henn, Cameron P Simmons
Publicado 2011

Transmission of equine influenza virus during an outbreak is characterized by frequent mixed infections and loose transmission bottlenecks.

por Joseph Hughes, Richard C Allen, Marc Baguelin, Katie Hampson, Gregory J Baillie, Debra Elton, J Richard Newton, Paul Kellam, James L N Wood, Edward C Holmes, Pablo R Murcia
Publicado 2012

Molecular epidemiology of A/H3N2 and A/H1N1 influenza virus during a single epidemic season in the United States.

por Martha I Nelson, Laurel Edelman, David J Spiro, Alex R Boyne, Jayati Bera, Rebecca Halpin, Naomi Sengamalay, Elodie Ghedin, Mark A Miller, Lone Simonsen, Cecile Viboud, Edward C Holmes
Publicado 2008

Publisher Correction: Sudden emergence of human infections with H7N9 avian influenza A virus in Hubei province, central China

por Jiafa Liu, Junqiang Xu, Linlin Liu, Xiaoman Wei, Yi Song, Bin Fang, Xiao Yu, Xiang Li, Guojun Ye, Yingying Du, Mingyue Chen, Weifeng Shi, Di Liu, Edward C. Holmes, Jie Cui
Publicado 2018

Phylogeny and origins of hantaviruses harbored by bats, insectivores, and rodents.

por Wen-Ping Guo, Xian-Dan Lin, Wen Wang, Jun-Hua Tian, Mei-Li Cong, Hai-Lin Zhang, Miao-Ruo Wang, Run-Hong Zhou, Jian-Bo Wang, Ming-Hui Li, Jianguo Xu, Edward C Holmes, Yong-Zhen Zhang
Publicado 2013

Evolution of an Eurasian avian-like influenza virus in naïve and vaccinated pigs.

por Pablo R Murcia, Joseph Hughes, Patrizia Battista, Lucy Lloyd, Gregory J Baillie, Ricardo H Ramirez-Gonzalez, Doug Ormond, Karen Oliver, Debra Elton, Jennifer A Mumford, Mario Caccamo, Paul Kellam, Bryan T Grenfell, Edward C Holmes, James L N Wood
Publicado 2012

PHYRN: a robust method for phylogenetic analysis of highly divergent sequences.

por Gaurav Bhardwaj, Kyung Dae Ko, Yoojin Hong, Zhenhai Zhang, Ngai Lam Ho, Sree V Chintapalli, Lindsay A Kline, Matthew Gotlin, David Nicholas Hartranft, Morgen E Patterson, Foram Dave, Evan J Smith, Edward C Holmes, Randen L Patterson, Damian B van Rossum
Publicado 2012

Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand

por Jemma L. Geoghegan, Xiaoyun Ren, Matthew Storey, James Hadfield, Lauren Jelley, Sarah Jefferies, Jill Sherwood, Shevaun Paine, Sue Huang, Jordan Douglas, Fábio K. Mendes, Andrew Sporle, Michael G. Baker, David R. Murdoch, Nigel French, Colin R. Simpson, David Welch, Alexei J. Drummond, Edward C. Holmes, Sebastián Duchêne, Joep de Ligt
Publicado 2020

New world bats harbor diverse influenza A viruses.

por Suxiang Tong, Xueyong Zhu, Yan Li, Mang Shi, Jing Zhang, Melissa Bourgeois, Hua Yang, Xianfeng Chen, Sergio Recuenco, Jorge Gomez, Li-Mei Chen, Adam Johnson, Ying Tao, Cyrille Dreyfus, Wenli Yu, Ryan McBride, Paul J Carney, Amy T Gilbert, Jessie Chang, Zhu Guo, Charles T Davis, James C Paulson, James Stevens, Charles E Rupprecht, Edward C Holmes, Ian A Wilson, Ruben O Donis
Publicado 2013

Field and classroom initiatives for portable sequence-based monitoring of dengue virus in Brazil

por Talita Émile Ribeiro Adelino, Marta Giovanetti, Vagner Fonseca, Joilson Xavier, Álvaro Salgado de Abreu, Valdinete Alves do Nascimento, Luiz Henrique Ferraz Demarchi, Marluce Aparecida Assunção Oliveira, Vinícius Lemes da Silva, Arabela Leal e. Silva de Mello, Gabriel Muricy Cunha, Roselene Hans Santos, Elaine Cristina de Oliveira, Jorge Antônio Chamon Júnior, Felipe Campos de Melo Iani, Ana Maria Bispo de Filippis, André Luiz de Abreu, Ronaldo de Jesus, Carlos Frederico Campelo de Albuquerque, Jairo Mendez Rico, Rodrigo Fabiano do Carmo Said, Joscélio Aguiar Silva, Noely Fabiana Oliveira de Moura, Priscila Leite, Lívia Carla Vinhal Frutuoso, Simone Kashima Haddad, Alexander Martínez, Fernanda Khouri Barreto, Cynthia Carolina Vazquez, Rivaldo Venâncio da Cunha, Emerson Luiz Lima Araújo, Stephane Fraga de Oliveira Tosta, Allison de Araújo Fabri, Flávia Löwen Levy Chalhoub, Poliana da Silva Lemos, Fernanda de Bruycker-Nogueira, Gislene Garcia de Castro Lichs, Marina Castilhos Souza Umaki Zardin, Fátima María Cardozo Segovia, Crhistinne Cavalheiro Maymone Gonçalves, Zoraida Del Carmen Fernandez Grillo, Svetoslav Nanev Slavov, Luiz Augusto Pereira, Ana Flávia Mendonça, Felicidade Mota Pereira, Jurandy Júnior Ferraz de Magalhães, Agenor de Castro Moreira dos Santos Júnior, Maricélia Maia de Lima, Rita Maria Ribeiro Nogueira, Aristóteles Góes-Neto, Vasco Ariston de Carvalho Azevedo, Dario Brock Ramalho, Wanderson Kleber Oliveira, Eduardo Marques Macario, Arnaldo Correia de Medeiros, Victor Pimentel, Latin American Genomic Surveillance Arboviral Network, Edward C. Holmes, Tulio de Oliveira, José Lourenço, Luiz Carlos Junior Alcantara
Publicado 2021