Identifying currents in the gene pool for bacterial populations using an integrative approach.

por Jing Tang, William P Hanage, Christophe Fraser, Jukka Corander
Publicado 2009

Approximate Bayesian computation.

por Mikael Sunnåker, Alberto Giovanni Busetto, Elina Numminen, Jukka Corander, Matthieu Foll, Christophe Dessimoz
Publicado 2013

Improved Prediction of Bacterial Genotype-Phenotype Associations Using Interpretable Pangenome-Spanning Regressions

por John A. Lees, T. Tien Mai, Marco Galardini, Nicole E. Wheeler, Samuel T. Horsfield, Julian Parkhill, Jukka Corander
Publicado 2020

Restricted Gene Flow among Hospital Subpopulations of <named-content content-type="genus-species">Enterococcus faecium</named-content>

por Rob J. L. Willems, Janetta Top, Willem van Schaik, Helen Leavis, Marc Bonten, Jukka Sirén, William P. Hanage, Jukka Corander
Publicado 2012

Diversification of Colonization Factors in a Multidrug-Resistant <named-content content-type="genus-species">Escherichia coli</named-content> Lineage Evolving under Negative Freque...

por Alan McNally, Teemu Kallonen, Christopher Connor, Khalil Abudahab, David M. Aanensen, Carolyne Horner, Sharon J. Peacock, Julian Parkhill, Nicholas J. Croucher, Jukka Corander
Publicado 2019

Quantifying bacterial evolution in the wild: A birthday problem for Campylobacter lineages.

por Jessica K Calland, Ben Pascoe, Sion C Bayliss, Evangelos Mourkas, Elvire Berthenet, Harry A Thorpe, Matthew D Hitchings, Edward J Feil, Jukka Corander, Martin J Blaser, Daniel Falush, Samuel K Sheppard
Publicado 2021

Transcriptome analysis reveals signature of adaptation to landscape fragmentation.

por Panu Somervuo, Jouni Kvist, Suvi Ikonen, Petri Auvinen, Lars Paulin, Patrik Koskinen, Liisa Holm, Minna Taipale, Anne Duplouy, Annukka Ruokolainen, Suvi Saarnio, Jukka Sirén, Jukka Kohonen, Jukka Corander, Mikko J Frilander, Virpi Ahola, Ilkka Hanski
Publicado 2014

Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes

por John A. Lees, Minna Vehkala, Niko Välimäki, Simon R. Harris, Claire Chewapreecha, Nicholas J. Croucher, Pekka Marttinen, Mark R. Davies, Andrew C. Steer, Steven Y. C. Tong, Antti Honkela, Julian Parkhill, Stephen D. Bentley, Jukka Corander
Publicado 2016

Genomic Surveillance of <named-content content-type="genus-species">Enterococcus faecium</named-content> Reveals Limited Sharing of Strains and Resistance Genes between Livestock a...

por Theodore Gouliouris, Kathy E. Raven, Catherine Ludden, Beth Blane, Jukka Corander, Carolyne S. Horner, Juan Hernandez-Garcia, Paul Wood, Nazreen F. Hadjirin, Milorad Radakovic, Mark A. Holmes, Marcus de Goffau, Nicholas M. Brown, Julian Parkhill, Sharon J. Peacock
Publicado 2018

Emergence of Epidemic Multidrug-Resistant <named-content content-type="genus-species">Enterococcus faecium</named-content> from Animal and Commensal Strains

por François Lebreton, Willem van Schaik, Abigail Manson McGuire, Paul Godfrey, Allison Griggs, Varun Mazumdar, Jukka Corander, Lu Cheng, Sakina Saif, Sarah Young, Qiandong Zeng, Jennifer Wortman, Bruce Birren, Rob J. L. Willems, Ashlee M. Earl, Michael S. Gilmore
Publicado 2013

New Pathogenesis Mechanisms and Translational Leads Identified by Multidimensional Analysis of Necrotizing Myositis in Primates

por Priyanka Kachroo, Jesus M. Eraso, Randall J. Olsen, Luchang Zhu, Samantha L. Kubiak, Layne Pruitt, Prasanti Yerramilli, Concepcion C. Cantu, Matthew Ojeda Saavedra, Johan Pensar, Jukka Corander, Leslie Jenkins, Lillian Kao, Alejandro Granillo, Adeline R. Porter, Frank R. DeLeo, James M. Musser
Publicado 2020

Genome evolution and the emergence of pathogenicity in avian Escherichia coli

por Leonardos Mageiros, Guillaume Méric, Sion C. Bayliss, Johan Pensar, Ben Pascoe, Evangelos Mourkas, Jessica K. Calland, Koji Yahara, Susan Murray, Thomas S. Wilkinson, Lisa K. Williams, Matthew D. Hitchings, Jonathan Porter, Kirsty Kemmett, Edward J. Feil, Keith A. Jolley, Nicola J. Williams, Jukka Corander, Samuel K. Sheppard
Publicado 2021

Author Correction: Genome evolution and the emergence of pathogenicity in avian Escherichia coli

por Leonardos Mageiros, Guillaume Méric, Sion C. Bayliss, Johan Pensar, Ben Pascoe, Evangelos Mourkas, Jessica K. Calland, Koji Yahara, Susan Murray, Thomas S. Wilkinson, Lisa K. Williams, Matthew D. Hitchings, Jonathan Porter, Kirsty Kemmett, Edward J. Feil, Keith A. Jolley, Nicola J. Williams, Jukka Corander, Samuel K. Sheppard
Publicado 2021

Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era

por Anna K. Pöntinen, Janetta Top, Sergio Arredondo-Alonso, Gerry Tonkin-Hill, Ana R. Freitas, Carla Novais, Rebecca A. Gladstone, Maiju Pesonen, Rodrigo Meneses, Henri Pesonen, John A. Lees, Dorota Jamrozy, Stephen D. Bentley, Val F. Lanza, Carmen Torres, Luisa Peixe, Teresa M. Coque, Julian Parkhill, Anita C. Schürch, Rob J. L. Willems, Jukka Corander
Publicado 2021

Whole-Genome Sequencing for Routine Pathogen Surveillance in Public Health: a Population Snapshot of Invasive <named-content content-type="genus-species">Staphylococcus aureus</nam...

por David M. Aanensen, Edward J. Feil, Matthew T. G. Holden, Janina Dordel, Corin A. Yeats, Artemij Fedosejev, Richard Goater, Santiago Castillo-Ramírez, Jukka Corander, Caroline Colijn, Monika A. Chlebowicz, Leo Schouls, Max Heck, Gerlinde Pluister, Raymond Ruimy, Gunnar Kahlmeter, Jenny Åhman, Erika Matuschek, Alexander W. Friedrich, Julian Parkhill, Stephen D. Bentley, Brian G. Spratt, Hajo Grundmann
Publicado 2016

What’s in a Name? Species-Wide Whole-Genome Sequencing Resolves Invasive and Noninvasive Lineages of <named-content content-type="genus-species">Salmonella enterica</named-content>...

por Thomas R. Connor, Sian V. Owen, Gemma Langridge, Steve Connell, Satheesh Nair, Sandra Reuter, Timothy J. Dallman, Jukka Corander, Kristine C. Tabing, Simon Le Hello, Maria Fookes, Benoît Doublet, Zhemin Zhou, Theresa Feltwell, Matthew J. Ellington, Silvia Herrera, Matthew Gilmour, Axel Cloeckaert, Mark Achtman, Julian Parkhill, John Wain, Elizabeth De Pinna, François-Xavier Weill, Tansy Peters, Nick Thomson
Publicado 2016

Transcriptome Remodeling Contributes to Epidemic Disease Caused by the Human Pathogen <named-content content-type="genus-species">Streptococcus pyogenes</named-content>

por Stephen B. Beres, Priyanka Kachroo, Waleed Nasser, Randall J. Olsen, Luchang Zhu, Anthony R. Flores, Ivan de la Riva, Jesus Paez-Mayorga, Francisco E. Jimenez, Concepcion Cantu, Jaana Vuopio, Jari Jalava, Karl G. Kristinsson, Magnus Gottfredsson, Jukka Corander, Nahuel Fittipaldi, Maria Chiara Di Luca, Dezemona Petrelli, Luca A. Vitali, Annessa Raiford, Leslie Jenkins, James M. Musser
Publicado 2016

Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis

por Guillaume Méric, Leonardos Mageiros, Johan Pensar, Maisem Laabei, Koji Yahara, Ben Pascoe, Nattinee Kittiwan, Phacharaporn Tadee, Virginia Post, Sarah Lamble, Rory Bowden, James E. Bray, Mario Morgenstern, Keith A. Jolley, Martin C. J. Maiden, Edward J. Feil, Xavier Didelot, Maria Miragaia, Herminia de Lencastre, T. Fintan Moriarty, Holger Rohde, Ruth Massey, Dietrich Mack, Jukka Corander, Samuel K. Sheppard
Publicado 2018

Publisher Correction: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis

por Lucy A. Weinert, Roy R. Chaudhuri, Jinhong Wang, Sarah E. Peters, Jukka Corander, Thibaut Jombart, Abiyad Baig, Kate J. Howell, Minna Vehkala, Niko Välimäki, David Harris, Tran Thi Bich Chieu, Nguyen Van Vinh Chau, James Campbell, Constance Schultsz, Julian Parkhill, Stephen D. Bentley, Paul R. Langford, Andrew N. Rycroft, Brendan W. Wren, Jeremy Farrar, Stephen Baker, Ngo Thi Hoa, Matthew T. G. Holden, Alexander W. Tucker, Duncan J. Maskell, BRaDP1T Consortium
Publicado 2019

Erratum: Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis

por Solveig K. Sieberts, Fan Zhu, Javier García-García, Eli Stahl, Abhishek Pratap, Gaurav Pandey, Dimitrios Pappas, Daniel Aguilar, Bernat Anton, Jaume Bonet, Ridvan Eksi, Oriol Fornés, Emre Guney, Hongdong Li, Manuel Alejandro Marín, Bharat Panwar, Joan Planas-Iglesias, Daniel Poglayen, Jing Cui, Andre O. Falcao, Christine Suver, Bruce Hoff, Venkat S. K. Balagurusamy, Donna Dillenberger, Elias Chaibub Neto, Thea Norman, Tero Aittokallio, Muhammad Ammad-ud-din, Chloe-Agathe Azencott, Víctor Bellón, Valentina Boeva, Kerstin Bunte, Himanshu Chheda, Lu Cheng, Jukka Corander, Michel Dumontier, Anna Goldenberg, Peddinti Gopalacharyulu, Mohsen Hajiloo, Daniel Hidru, Alok Jaiswal, Samuel Kaski, Beyrem Khalfaoui, Suleiman Ali Khan, Eric R. Kramer, Pekka Marttinen, Aziz M. Mezlini, Bhuvan Molparia, Matti Pirinen, Janna Saarela, Matthias Samwald, Véronique Stoven, Hao Tang, Jing Tang, Ali Torkamani, Jean-Phillipe Vert, Bo Wang, Tao Wang, Krister Wennerberg, Nathan E. Wineinger, Guanghua Xiao, Yang Xie, Rae Yeung, Xiaowei Zhan, Cheng Zhao, Members of the Rheumatoid Arthritis Challenge Consortium, Jeff Greenberg, Joel Kremer, Kaleb Michaud, Anne Barton, Marieke Coenen, Xavier Mariette, Corinne Miceli, Nancy Shadick, Michael Weinblatt, Niek de Vries, Paul P. Tak, Danielle Gerlag, Tom W. J. Huizinga, Fina Kurreeman, Cornelia F. Allaart, S. Louis Bridges Jr., Lindsey Criswell, Larry Moreland, Lars Klareskog, Saedis Saevarsdottir, Leonid Padyukov, Peter K. Gregersen, Stephen Friend, Robert Plenge, Gustavo Stolovitzky, Baldo Oliva, Yuanfang Guan, Lara M. Mangravite
Publicado 2016