Rapidly Processed Stool Swabs Approximate Stool Microbiota Profiles

by Nicholas A. Bokulich, Juan Maldonado, Dae-Wook Kang, Rosa Krajmalnik-Brown, J. Gregory Caporaso
Published 2019

Species abundance information improves sequence taxonomy classification accuracy

by Benjamin D. Kaehler, Nicholas A. Bokulich, Daniel McDonald, Rob Knight, J. Gregory Caporaso, Gavin A. Huttley
Published 2019

Associations among Wine Grape Microbiome, Metabolome, and Fermentation Behavior Suggest Microbial Contribution to Regional Wine Characteristics

by Nicholas A. Bokulich, Thomas S. Collins, Chad Masarweh, Greg Allen, Hildegarde Heymann, Susan E. Ebeler, David A. Mills
Published 2016

RESCRIPt: Reproducible sequence taxonomy reference database management.

by Michael S Robeson, Devon R O'Rourke, Benjamin D Kaehler, Michal Ziemski, Matthew R Dillon, Jeffrey T Foster, Nicholas A Bokulich
Published 2021

RESCRIPt: Reproducible sequence taxonomy reference database management

by Michael S. Robeson, Devon R. O’Rourke, Benjamin D. Kaehler, Michal Ziemski, Matthew R. Dillon, Jeffrey T. Foster, Nicholas A. Bokulich
Published 2021

q2-longitudinal: Longitudinal and Paired-Sample Analyses of Microbiome Data

by Nicholas A. Bokulich, Matthew R. Dillon, Yilong Zhang, Jai Ram Rideout, Evan Bolyen, Huilin Li, Paul S. Albert, J. Gregory Caporaso
Published 2018

mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking

by Nicholas A. Bokulich, Jai Ram Rideout, William G. Mercurio, Arron Shiffer, Benjamin Wolfe, Corinne F. Maurice, Rachel J. Dutton, Peter J. Turnbaugh, Rob Knight, J. Gregory Caporaso
Published 2016

The Soil Microbiome Influences Grapevine-Associated Microbiota

by Iratxe Zarraonaindia, Sarah M. Owens, Pamela Weisenhorn, Kristin West, Jarrad Hampton-Marcell, Simon Lax, Nicholas A. Bokulich, David A. Mills, Gilles Martin, Safiyh Taghavi, Daniel van der Lelie, Jack A. Gilbert
Published 2015

An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona

by Jason T. Ladner, Brendan B. Larsen, Jolene R. Bowers, Crystal M. Hepp, Evan Bolyen, Megan Folkerts, Krystal Sheridan, Ashlyn Pfeiffer, Hayley Yaglom, Darrin Lemmer, Jason W. Sahl, Emily A. Kaelin, Rabia Maqsood, Nicholas A. Bokulich, Grace Quirk, Thomas D. Watts, Kenneth K. Komatsu, Victor Waddell, Efrem S. Lim, J. Gregory Caporaso, David M. Engelthaler, Michael Worobey, Paul Keim
Published 2020