Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data.

by Thibaut Jombart, Anne Cori, Xavier Didelot, Simon Cauchemez, Christophe Fraser, Neil Ferguson
Published 2014

Comparative Analysis of <named-content content-type="genus-species">Chlamydia psittaci</named-content> Genomes Reveals the Recent Emergence of a Pathogenic Lineage with a Broad Hos...

by Timothy D. Read, Sandeep J. Joseph, Xavier Didelot, Brooke Liang, Lisa Patel, Deborah Dean
Published 2013

Inference of person-to-person transmission of COVID-19 reveals hidden super-spreading events during the early outbreak phase

by Liang Wang, Xavier Didelot, Jing Yang, Gary Wong, Yi Shi, Wenjun Liu, George F. Gao, Yuhai Bi
Published 2020

Genome-wide analysis of chromosomal import patterns after natural transformation of Helicobacter pylori

by Sebastian Bubendorfer, Juliane Krebes, Ines Yang, Elias Hage, Thomas F. Schulz, Christelle Bahlawane, Xavier Didelot, Sebastian Suerbaum
Published 2016

Within-host evolution of Helicobacter pylori shaped by niche-specific adaptation, intragastric migrations and selective sweeps

by Florent Ailloud, Xavier Didelot, Sabrina Woltemate, Gudrun Pfaffinger, Jörg Overmann, Ruth Christiane Bader, Christian Schulz, Peter Malfertheiner, Sebastian Suerbaum
Published 2019

Patterns of gene flow define species of thermophilic Archaea.

by Hinsby Cadillo-Quiroz, Xavier Didelot, Nicole L Held, Alfa Herrera, Aaron Darling, Michael L Reno, David J Krause, Rachel J Whitaker
Published 2012

A combined case-control and molecular source attribution study of human Campylobacter infections in Germany, 2011–2014

by Bettina M. Rosner, Anika Schielke, Xavier Didelot, Friederike Kops, Janina Breidenbach, Niklas Willrich, Greta Gölz, Thomas Alter, Kerstin Stingl, Christine Josenhans, Sebastian Suerbaum, Klaus Stark
Published 2017

Microevolution of Neisseria lactamica during nasopharyngeal colonisation induced by controlled human infection

by Anish Pandey, David W. Cleary, Jay R. Laver, Andrew Gorringe, Alice M. Deasy, Adam P. Dale, Paul D. Morris, Xavier Didelot, Martin C. J. Maiden, Robert C. Read
Published 2018

Genomic Analysis and Comparison of Two Gonorrhea Outbreaks

by Xavier Didelot, Janina Dordel, Lilith K. Whittles, Caitlin Collins, Nicole Bilek, Cynthia J. Bishop, Peter J. White, David M. Aanensen, Julian Parkhill, Stephen D. Bentley, Brian G. Spratt, Simon R. Harris
Published 2016

Rapid Detection of Mobilized Colistin Resistance using a Nucleic Acid Based Lab-on-a-Chip Diagnostic System

by Jesus Rodriguez-Manzano, Nicolas Moser, Kenny Malpartida-Cardenas, Ahmad Moniri, Lenka Fisarova, Ivana Pennisi, Adhiratha Boonyasiri, Elita Jauneikaite, Alireza Abdolrasouli, Jonathan A. Otter, Frances Bolt, Frances Davies, Xavier Didelot, Alison Holmes, Pantelis Georgiou
Published 2020

Clinical Clostridium difficile: clonality and pathogenicity locus diversity.

by Kate E Dingle, David Griffiths, Xavier Didelot, Jessica Evans, Alison Vaughan, Melina Kachrimanidou, Nicole Stoesser, Keith A Jolley, Tanya Golubchik, Rosalind M Harding, Tim E Peto, Warren Fawley, A Sarah Walker, Mark Wilcox, Derrick W Crook
Published 2011

The global distribution and spread of the mobilized colistin resistance gene mcr-1

by Ruobing Wang, Lucy van Dorp, Liam P. Shaw, Phelim Bradley, Qi Wang, Xiaojuan Wang, Longyang Jin, Qing Zhang, Yuqing Liu, Adrien Rieux, Thamarai Dorai-Schneiders, Lucy Anne Weinert, Zamin Iqbal, Xavier Didelot, Hui Wang, Francois Balloux
Published 2018

A Role for Tetracycline Selection in Recent Evolution of Agriculture-Associated <italic toggle="yes">Clostridium difficile</italic> PCR Ribotype 078

by Kate E. Dingle, Xavier Didelot, T. Phuong Quan, David W. Eyre, Nicole Stoesser, Charis A. Marwick, John Coia, Derek Brown, Sarah Buchanan, Umer Z. Ijaz, Cosmika Goswami, Gill Douce, Warren N. Fawley, Mark H. Wilcox, Timothy E. A. Peto, A. Sarah Walker, Derrick W. Crook
Published 2019

Within-host evolution of Staphylococcus aureus during asymptomatic carriage.

by Tanya Golubchik, Elizabeth M Batty, Ruth R Miller, Helen Farr, Bernadette C Young, Hanna Larner-Svensson, Rowena Fung, Heather Godwin, Kyle Knox, Antonina Votintseva, Richard G Everitt, Teresa Street, Madeleine Cule, Camilla L C Ip, Xavier Didelot, Timothy E A Peto, Rosalind M Harding, Daniel J Wilson, Derrick W Crook, Rory Bowden
Published 2013

Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis

by Guillaume Méric, Leonardos Mageiros, Johan Pensar, Maisem Laabei, Koji Yahara, Ben Pascoe, Nattinee Kittiwan, Phacharaporn Tadee, Virginia Post, Sarah Lamble, Rory Bowden, James E. Bray, Mario Morgenstern, Keith A. Jolley, Martin C. J. Maiden, Edward J. Feil, Xavier Didelot, Maria Miragaia, Herminia de Lencastre, T. Fintan Moriarty, Holger Rohde, Ruth Massey, Dietrich Mack, Jukka Corander, Samuel K. Sheppard
Published 2018

Evolutionary History of the Global Emergence of the <named-content content-type="genus-species">Escherichia coli</named-content> Epidemic Clone ST131

by Nicole Stoesser, Anna E. Sheppard, Louise Pankhurst, Nicola De Maio, Catrin E. Moore, Robert Sebra, Paul Turner, Luke W. Anson, Andrew Kasarskis, Elizabeth M. Batty, Veronica Kos, Daniel J. Wilson, Rattanaphone Phetsouvanh, David Wyllie, Evgeni Sokurenko, Amee R. Manges, Timothy J. Johnson, Lance B. Price, Timothy E. A. Peto, James R. Johnson, Xavier Didelot, A. Sarah Walker, Derrick W. Crook
Published 2016

Range Expansion and the Origin of USA300 North American Epidemic Methicillin-Resistant <italic toggle="yes">Staphylococcus aureus</italic>

by Lavanya Challagundla, Xiao Luo, Isabella A. Tickler, Xavier Didelot, David C. Coleman, Anna C. Shore, Geoffrey W. Coombs, Daniel O. Sordelli, Eric L. Brown, Robert Skov, Anders Rhod Larsen, Jinnethe Reyes, Iraida E. Robledo, Guillermo J. Vazquez, Raul Rivera, Paul D. Fey, Kurt Stevenson, Shu-Hua Wang, Barry N. Kreiswirth, Jose R. Mediavilla, Cesar A. Arias, Paul J. Planet, Rathel L. Nolan, Fred C. Tenover, Richard V. Goering, D. Ashley Robinson
Published 2018