Targeted Manipulation of Abundant and Rare Taxa in the <italic toggle="yes">Daphnia magna</italic> Microbiota with Antibiotics Impacts Host Fitness Differentially

por Reilly O. Cooper, Janna M. Vavra, Clayton E. Cressler
Publicado 2021

Maternal Emulsifier P80 Intake Induces Gut Dysbiosis in Offspring and Increases Their Susceptibility to Colitis in Adulthood

por Ge Jin, Qiang Tang, Jiaheng Ma, Xiang Liu, Bingqian Zhou, Yue Sun, Xiaoqi Pang, Zixuan Guo, Runxiang Xie, Tianyu Liu, Bangmao Wang, Hailong Cao
Publicado 2021

Fungal and Bacterial Loads: Noninvasive Inflammatory Bowel Disease Biomarkers for the Clinical Setting

por G. Sarrabayrouse, A. Elias, F. Yáñez, L. Mayorga, E. Varela, C. Bartoli, F. Casellas, N. Borruel, C. Herrera de Guise, K. Machiels, S. Vermeire, C. Manichanh
Publicado 2021

Correction for Altamia et al., “Secondary Metabolism in the Gill Microbiota of Shipworms (Teredinidae) as Revealed by Comparison of Metagenomes and Nearly Complete Symbiont Genomes...

por Marvin A. Altamia, Zhenjian Lin, Amaro E. Trindade-Silva, Iris Diana Uy, J. Reuben Shipway, Diego Veras Wilke, Gisela P. Concepcion, Daniel L. Distel, Eric W. Schmidt, Margo G. Haygood
Publicado 2021

Systems Biology behind Immunoprotection of Both Sheep and Goats after Sungri/96 PPRV Vaccination

por Sajad Ahmad Wani, Manas Ranjan Praharaj, Amit R. Sahu, Raja Ishaq Nabi Khan, Shikha Saxena, Kaushal Kishor Rajak, Dhanavelu Muthuchelvan, Aditya Sahoo, Bina Mishra, Raj Kumar Singh, Bishnu Prasad Mishra, Ravi Kumar Gandham
Publicado 2021

Finding Needles in Haystacks and Inferring Their Function: Challenges and Successes in Beneficial Symbiosis Research

por Gordon M. Bennett, Elizabeth Heath-Heckman, E. Maggie Sogin
Publicado 2021

High-Fiber, Whole-Food Dietary Intervention Alters the Human Gut Microbiome but Not Fecal Short-Chain Fatty Acids

por Andrew Oliver, Alexander B. Chase, Claudia Weihe, Stephanie B. Orchanian, Stefan F. Riedel, Clark L. Hendrickson, Mi Lay, Julia Massimelli Sewall, Jennifer B. H. Martiny, Katrine Whiteson
Publicado 2021

<italic toggle="yes">In Vitro</italic> Gut Modeling as a Tool for Adaptive Evolutionary Engineering of <italic toggle="yes">Lactiplantibacillus plantarum</italic>

por Julia Isenring, Annelies Geirnaert, Alex R. Hall, Christoph Jans, Christophe Lacroix, Marc J. A. Stevens
Publicado 2021

The Role of the Microbiome in Autism: All That We Know about All That We Don’t Know

por Maude M. David
Publicado 2021

EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets

por Kalen Cantrell, Marcus W. Fedarko, Gibraan Rahman, Daniel McDonald, Yimeng Yang, Thant Zaw, Antonio Gonzalez, Stefan Janssen, Mehrbod Estaki, Niina Haiminen, Kristen L. Beck, Qiyun Zhu, Erfan Sayyari, James T. Morton, George Armstrong, Anupriya Tripathi, Julia M. Gauglitz, Clarisse Marotz, Nathaniel L. Matteson, Cameron Martino, Jon G. Sanders, Anna Paola Carrieri, Se Jin Song, Austin D. Swafford, Pieter C. Dorrestein, Kristian G. Andersen, Laxmi Parida, Ho-Cheol Kim, Yoshiki Vázquez-Baeza, Rob Knight
Publicado 2021

Limited and Strain-Specific Transcriptional and Growth Responses to Acquisition of a Multidrug Resistance Plasmid in Genetically Diverse <named-content content-type="genus-species"...

por Steven Dunn, Laura Carrilero, Michael Brockhurst, Alan McNally
Publicado 2021

From Plants to Ants: Fungal Modification of Leaf Lipids for Nutrition and Communication in the Leaf-Cutter Ant Fungal Garden Ecosystem

por Lily Khadempour, Jennifer E. Kyle, Bobbie-Jo M. Webb-Robertson, Carrie D. Nicora, Francesca B. Smith, Richard D. Smith, Mary S. Lipton, Cameron R. Currie, Erin S. Baker, Kristin E. Burnum-Johnson
Publicado 2021

Presence of Bromotyrosine Alkaloids in Marine Sponges Is Independent of Metabolomic and Microbiome Architectures

por Ipsita Mohanty, Subhasish Tapadar, Samuel G. Moore, Jason S. Biggs, Christopher J. Freeman, David A. Gaul, Neha Garg, Vinayak Agarwal
Publicado 2021

Elucidation of the Pathogenicity-Associated Regulatory Network in <named-content content-type="genus-species">Xanthomonas oryzae</named-content> pv. oryzae

por Dehong Zheng, Huihui Wang, Hao Zhong, Wenli Ke, Huifeng Hu, Ming Sun, Lifang Ruan
Publicado 2021

Direct Nanopore Sequencing of mRNA Reveals Landscape of Transcript Isoforms in Apicomplexan Parasites

por V. Vern Lee, Louise M. Judd, Aaron R. Jex, Kathryn E. Holt, Christopher J. Tonkin, Stuart A. Ralph
Publicado 2021

Bacterial Microcompartments Coupled with Extracellular Electron Transfer Drive the Anaerobic Utilization of Ethanolamine in <named-content content-type="genus-species">Listeria mon...

por Zhe Zeng, Sjef Boeren, Varaang Bhandula, Samuel H. Light, Eddy J. Smid, Richard A. Notebaart, Tjakko Abee
Publicado 2021

Nutraceuticals Induced Changes in the Broiler Gastrointestinal Tract Microbiota

por Emese Tolnai, Peter Fauszt, Gabor Fidler, Georgina Pesti-Asboth, Endre Szilagyi, Aniko Stagel, Jozsef Konya, Judit Szabo, Laszlo Stundl, Laszlo Babinszky, Judit Remenyik, Sandor Biro, Melinda Paholcsek
Publicado 2021

Whole-Genome Sequencing and Machine Learning Analysis of <named-content content-type="genus-species">Staphylococcus aureus</named-content> from Multiple Heterogeneous Sources in Ch...

por Wei Wang, Michelle Baker, Yue Hu, Jin Xu, Dajin Yang, Alexandre Maciel-Guerra, Ning Xue, Hui Li, Shaofei Yan, Menghan Li, Yao Bai, Yinping Dong, Zixin Peng, Jinjing Ma, Fengqin Li, Tania Dottorini
Publicado 2021

Sputum Proteome Signatures of Mechanically Ventilated Intensive Care Unit Patients Distinguish Samples with or without Anti-pneumococcal Activity

por Jolien Seinen, Rudolf Engelke, Mohammed R. Abdullah, Franziska Voß, Stephan Michalik, Vishnu M. Dhople, Willem Dieperink, Anne Marie G. A. de Smet, Uwe Völker, Jan Maarten van Dijl, Frank Schmidt, Sven Hammerschmidt
Publicado 2021

Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities

por Pajau Vangay, Josephine Burgin, Anjanette Johnston, Kristen L. Beck, Daniel C. Berrios, Kai Blumberg, Shane Canon, Patrick Chain, John-Marc Chandonia, Danielle Christianson, Sylvain V. Costes, Joan Damerow, William D. Duncan, Jose Pablo Dundore-Arias, Kjiersten Fagnan, Jonathan M. Galazka, Sean M. Gibbons, David Hays, Judson Hervey, Bin Hu, Bonnie L. Hurwitz, Pankaj Jaiswal, Marcin P. Joachimiak, Linda Kinkel, Joshua Ladau, Stanton L. Martin, Lee Ann McCue, Kayd Miller, Nigel Mouncey, Chris Mungall, Evangelos Pafilis, T. B. K. Reddy, Lorna Richardson, Simon Roux, Lynn M. Schriml, Justin P. Shaffer, Jagadish Chandrabose Sundaramurthi, Luke R. Thompson, Ruth E. Timme, Jie Zheng, Elisha M. Wood-Charlson, Emiley A. Eloe-Fadrosh
Publicado 2021