Genomic epidemiology of Shigella in the United Kingdom shows transmission of pathogen sublineages and determinants of antimicrobial resistance

by Kate S. Baker, Timothy J. Dallman, Nigel Field, Tristan Childs, Holly Mitchell, Martin Day, François-Xavier Weill, Sophie Lefèvre, Mathieu Tourdjman, Gwenda Hughes, Claire Jenkins, Nicholas Thomson
Published 2018

Horizontal antimicrobial resistance transfer drives epidemics of multiple Shigella species

by Kate S. Baker, Timothy J. Dallman, Nigel Field, Tristan Childs, Holly Mitchell, Martin Day, François-Xavier Weill, Sophie Lefèvre, Mathieu Tourdjman, Gwenda Hughes, Claire Jenkins, Nicholas Thomson
Published 2018

Contamination of street food with multidrug-resistant Salmonella, in Ouagadougou, Burkina Faso.

by Marguerite E M Nikiema, Maria Pardos de la Gandara, Kiswensida A M Compaore, Absétou Ky Ba, Karna D Soro, Philippe A Nikiema, Nicolas Barro, Lassana Sangare, François-Xavier Weill
Published 2021

Multilocus sequence typing as a replacement for serotyping in Salmonella enterica.

by Mark Achtman, John Wain, François-Xavier Weill, Satheesh Nair, Zhemin Zhou, Vartul Sangal, Mary G Krauland, James L Hale, Heather Harbottle, Alexandra Uesbeck, Gordon Dougan, Lee H Harrison, Sylvain Brisse, S. Enterica MLST Study Group
Published 2012

Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei

by Jane Hawkey, Kalani Paranagama, Kate S. Baker, Rebecca J. Bengtsson, François-Xavier Weill, Nicholas R. Thomson, Stephen Baker, Louise Cerdeira, Zamin Iqbal, Martin Hunt, Danielle J. Ingle, Timothy J. Dallman, Claire Jenkins, Deborah A. Williamson, Kathryn E. Holt
Published 2021

Comparative Genomics of Recent Shiga Toxin-Producing <named-content content-type="genus-species">Escherichia coli</named-content> O104:H4: Short-Term Evolution of an Emerging Patho...

by Yonatan H. Grad, Paul Godfrey, Gustavo C. Cerquiera, Patricia Mariani-Kurkdjian, Malika Gouali, Edouard Bingen, Terrence P. Shea, Brian J. Haas, Allison Griggs, Sarah Young, Qiandong Zeng, Marc Lipsitch, Matthew K. Waldor, François-Xavier Weill, Jennifer R. Wortman, William P. Hanage
Published 2013

Correction: Corrigendum: Allelic variation contributes to bacterial host specificity

by Min Yue, Xiangan Han, Leon De Masi, Chunhong Zhu, Xun Ma, Junjie Zhang, Renwei Wu, Robert Schmieder, Radhey S. Kaushik, George P. Fraser, Shaohua Zhao, Patrick F. McDermott, François-Xavier Weill, Jacques G. Mainil, Cesar Arze, W. Florian Fricke, Robert A. Edwards, Dustin Brisson, Nancy R. Zhang, Shelley C. Rankin, Dieter M. Schifferli
Published 2017

What’s in a Name? Species-Wide Whole-Genome Sequencing Resolves Invasive and Noninvasive Lineages of <named-content content-type="genus-species">Salmonella enterica</named-content>...

by Thomas R. Connor, Sian V. Owen, Gemma Langridge, Steve Connell, Satheesh Nair, Sandra Reuter, Timothy J. Dallman, Jukka Corander, Kristine C. Tabing, Simon Le Hello, Maria Fookes, Benoît Doublet, Zhemin Zhou, Theresa Feltwell, Matthew J. Ellington, Silvia Herrera, Matthew Gilmour, Axel Cloeckaert, Mark Achtman, Julian Parkhill, John Wain, Elizabeth De Pinna, François-Xavier Weill, Tansy Peters, Nick Thomson
Published 2016

Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei

by Hao Chung The, Christine Boinett, Duy Pham Thanh, Claire Jenkins, Francois-Xavier Weill, Benjamin P. Howden, Mary Valcanis, Niall De Lappe, Martin Cormican, Sonam Wangchuk, Ladaporn Bodhidatta, Carl J. Mason, To Nguyen Thi Nguyen, Tuyen Ha Thanh, Vinh Phat Voong, Vu Thuy Duong, Phu Huong Lan Nguyen, Paul Turner, Ryan Wick, Pieter-Jan Ceyssens, Guy Thwaites, Kathryn E. Holt, Nicholas R. Thomson, Maia A. Rabaa, Stephen Baker
Published 2019